Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VC5 entry

There is 1 chain in PDB entry 3VC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 64Right-handed alpha
Helix 2
2
A
72 85Right-handed alpha
Helix 3
3
A
100 125Right-handed alpha
Helix 4
4
A
127 132Right-handed alpha
Helix 5
5
A
166 182Right-handed alpha
Helix 6
6
A
194 209Right-handed alpha
Helix 7
7
A
223 234Right-handed alpha
Helix 8
8
A
247 256Right-handed alpha
Helix 9
9
A
270 272Right-handed 310
Helix 10
10
A
273 281Right-handed alpha
Helix 11
11
A
289 294Right-handed alpha
Helix 12
12
A
295 309Right-handed alpha
Helix 13
13
A
321 334Right-handed alpha
Helix 14
14
A
345 350Right-handed 310
Helix 15
15
A
380 394Right-handed alpha
Helix 16
16
A
400 409Right-handed alpha
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There are 4 sheets in PDB entry 3VC5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 14first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
43 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
366 368anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
186 189parallel
Strand 3
A
214 217parallel
Strand 4
A
240 242parallel
Strand 5
A
262 264parallel
Strand 6
A
285 288parallel
Strand 7
A
312 315parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il