Analysis of interatomic Contacts of Structural Units in PDB entry:
3VCD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VCD entry

There are 8 chains in PDB entry 3VCD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 185
B	SER 2	GLY 184
C	SER 2	GLY 184
D	SER 2	GLY 184
E	SER 2	LEU 185
F	SER 2	GLY 184
G	SER 2	GLY 184
H	SER 2	ALA 115

There are 48 helices in PDB entry 3VCD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	27	Right-handed alpha
Helix 2	2	A	50	65	Right-handed alpha
Helix 3	3	A	80	87	Right-handed alpha
Helix 4	4	A	104	118	Right-handed alpha
Helix 5	5	A	143	161	Right-handed alpha
Helix 6	6	A	174	183	Right-handed alpha
Helix 7	7	B	12	24	Right-handed alpha
Helix 8	8	B	50	65	Right-handed alpha
Helix 9	9	B	80	87	Right-handed alpha
Helix 10	10	B	104	118	Right-handed alpha
Helix 11	11	B	143	161	Right-handed alpha
Helix 12	12	B	174	183	Right-handed alpha
Helix 13	13	C	12	27	Right-handed alpha
Helix 14	14	C	50	65	Right-handed alpha
Helix 15	15	C	80	87	Right-handed alpha
Helix 16	16	C	104	119	Right-handed alpha
Helix 17	17	C	143	161	Right-handed alpha
Helix 18	18	C	174	183	Right-handed alpha
Helix 19	19	D	12	26	Right-handed alpha
Helix 20	20	D	50	65	Right-handed alpha
Helix 21	21	D	80	87	Right-handed alpha
Helix 22	22	D	104	118	Right-handed alpha
Helix 23	23	D	143	161	Right-handed alpha
Helix 24	24	D	174	183	Right-handed alpha
Helix 25	25	E	12	27	Right-handed alpha
Helix 26	26	E	50	65	Right-handed alpha
Helix 27	27	E	80	87	Right-handed alpha
Helix 28	28	E	104	118	Right-handed alpha
Helix 29	29	E	143	161	Right-handed alpha
Helix 30	30	E	174	182	Right-handed alpha
Helix 31	31	F	12	27	Right-handed alpha
Helix 32	32	F	50	65	Right-handed alpha
Helix 33	33	F	80	87	Right-handed alpha
Helix 34	34	F	104	118	Right-handed alpha
Helix 35	35	F	143	161	Right-handed alpha
Helix 36	36	F	174	183	Right-handed alpha
Helix 37	37	G	12	27	Right-handed alpha
Helix 38	38	G	50	65	Right-handed alpha
Helix 39	39	G	80	87	Right-handed alpha
Helix 40	40	G	104	118	Right-handed alpha
Helix 41	41	G	143	161	Right-handed alpha
Helix 42	42	G	174	183	Right-handed alpha
Helix 43	43	H	12	27	Right-handed alpha
Helix 44	44	H	50	65	Right-handed alpha
Helix 45	45	H	80	87	Right-handed alpha
Helix 46	46	H	104	118	Right-handed alpha
Helix 47	47	H	143	161	Right-handed alpha
Helix 48	48	H	174	183	Right-handed alpha

There are 16 sheets in PDB entry 3VCD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	37	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	3	10	anti-parallel
Strand 4	A	68	77	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	128	first strand
Strand 2	A	135	142	anti-parallel
Strand 3	A	96	103	anti-parallel
Strand 4	A	164	170	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	37	first strand
Strand 2	B	41	49	anti-parallel
Strand 3	B	3	10	anti-parallel
Strand 4	B	68	77	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	128	first strand
Strand 2	B	135	142	anti-parallel
Strand 3	B	96	103	anti-parallel
Strand 4	B	164	170	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	37	first strand
Strand 2	C	41	49	anti-parallel
Strand 3	C	3	10	anti-parallel
Strand 4	C	68	77	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	128	first strand
Strand 2	C	135	142	anti-parallel
Strand 3	C	96	103	anti-parallel
Strand 4	C	164	170	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	37	first strand
Strand 2	D	41	49	anti-parallel
Strand 3	D	3	10	anti-parallel
Strand 4	D	68	77	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	128	first strand
Strand 2	D	135	142	anti-parallel
Strand 3	D	96	103	anti-parallel
Strand 4	D	164	170	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	37	first strand
Strand 2	E	41	49	anti-parallel
Strand 3	E	3	10	anti-parallel
Strand 4	E	68	77	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	128	first strand
Strand 2	E	135	142	anti-parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	164	170	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	37	first strand
Strand 2	F	41	49	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	68	77	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	128	first strand
Strand 2	F	135	142	anti-parallel
Strand 3	F	96	103	anti-parallel
Strand 4	F	164	170	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	37	first strand
Strand 2	G	41	49	anti-parallel
Strand 3	G	3	10	anti-parallel
Strand 4	G	68	77	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	128	first strand
Strand 2	G	135	142	anti-parallel
Strand 3	G	96	103	anti-parallel
Strand 4	G	164	170	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	37	first strand
Strand 2	H	41	49	anti-parallel
Strand 3	H	3	10	anti-parallel
Strand 4	H	68	77	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	128	first strand
Strand 2	H	135	142	anti-parallel
Strand 3	H	96	103	anti-parallel
Strand 4	H	164	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VCD

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VCD