Analysis of interatomic Contacts of Structural Units in PDB entry:
3VCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VCF entry

There are 2 chains in PDB entry 3VCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 176VAL 335
B
 TYR 177VAL 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
180 193Right-handed alpha
Helix 2
2
A
195 209Right-handed alpha
Helix 3
3
A
211 221Right-handed alpha
Helix 4
4
A
222 225Right-handed 310
Helix 5
5
A
260 270Right-handed alpha
Helix 6
6
A
277 291Right-handed alpha
Helix 7
7
A
294 302Right-handed alpha
Helix 8
8
A
316 335Right-handed alpha
Helix 9
9
B
180 195Right-handed alpha
Helix 10
10
B
195 209Right-handed alpha
Helix 11
11
B
211 221Right-handed alpha
Helix 12
12
B
222 225Right-handed 310
Helix 13
13
B
260 270Right-handed alpha
Helix 14
14
B
276 291Right-handed alpha
Helix 15
15
B
294 302Right-handed alpha
Helix 16
16
B
317 333Right-handed alpha
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There are 2 sheets in PDB entry 3VCF. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
245 250anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
246 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il