Analysis of interatomic Contacts of Structural Units in PDB entry:
3VCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VCM entry

There are 4 chains in PDB entry 3VCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5ARG 326
B
 VAL 4ARG 326
P
 THR 6ARG 43
Q
 THR 6MET 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3VCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
111 115Right-handed 310
Helix 4
4
A
125 133Right-handed 310
Helix 5
5
A
135 142Right-handed alpha
Helix 6
6
A
224 236Right-handed alpha
Helix 7
7
A
270 275Right-handed alpha
Helix 8
8
A
302 308Right-handed alpha
Helix 9
9
B
57 61Right-handed 310
Helix 10
10
B
108 113Right-handed alpha
Helix 11
11
B
125 129Right-handed 310
Helix 12
12
B
135 144Right-handed alpha
Helix 13
13
B
224 236Right-handed alpha
Helix 14
14
B
250 255Right-handed 310
Helix 15
15
B
270 275Right-handed alpha
Helix 16
16
B
302 308Right-handed alpha
Helix 17
17
P
18 27Right-handed alpha
Helix 18
18
P
29 34Right-handed 310
Helix 19
19
Q
18 26Right-handed alpha
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There are 10 sheets in PDB entry 3VCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
119 122anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
14 20anti-parallel
Strand 8
A
89 91anti-parallel
Strand 9
A
94 96anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
119 122anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
14 20anti-parallel
Strand 8
P
9 15anti-parallel
Strand 9
A
162 167anti-parallel
Strand 10
A
150 155anti-parallel
Strand 11
A
309 314anti-parallel
Strand 12
A
319 325anti-parallel
Strand 13
A
175 183anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
298 301parallel
Strand 5
A
221 222anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
258 262anti-parallel
Strand 4
A
265 269anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
281 283anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 73first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
38 41parallel
Strand 5
B
119 122anti-parallel
Strand 6
B
25 32parallel
Strand 7
B
14 20anti-parallel
Strand 8
B
89 90anti-parallel
Strand 9
B
95 96anti-parallel
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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 73first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
38 41parallel
Strand 5
B
119 122anti-parallel
Strand 6
B
25 32parallel
Strand 7
B
14 20anti-parallel
Strand 8
Q
9 15anti-parallel
Strand 9
B
163 167anti-parallel
Strand 10
B
150 155anti-parallel
Strand 11
B
309 314anti-parallel
Strand 12
B
319 325anti-parallel
Strand 13
B
175 183anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
210 213anti-parallel
Strand 3
B
299 301parallel
Strand 4
B
221 223anti-parallel
Strand 5
B
286 288parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
197 199anti-parallel
Strand 3
B
258 261anti-parallel
Strand 4
B
266 269anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
281 283anti-parallel
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