Analysis of interatomic Contacts of Structural Units in PDB entry:
3VDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VDH entry

There are 2 chains in PDB entry 3VDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ASN 352
B
 ALA 6ASN 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3VDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
40 46Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
86 104Right-handed alpha
Helix 6
6
A
126 148Right-handed alpha
Helix 7
7
A
177 196Right-handed alpha
Helix 8
8
A
197 202Right-handed 310
Helix 9
9
A
210 213Right-handed 310
Helix 10
10
A
215 221Right-handed alpha
Helix 11
11
A
244 249Right-handed alpha
Helix 12
12
A
253 271Right-handed alpha
Helix 13
13
A
285 289Right-handed 310
Helix 14
14
A
296 317Right-handed alpha
Helix 15
15
A
329 335Right-handed 310
Helix 16
16
A
340 352Right-handed alpha
Helix 17
17
B
12 21Right-handed alpha
Helix 18
18
B
40 46Right-handed alpha
Helix 19
19
B
54 64Right-handed alpha
Helix 20
20
B
75 79Right-handed 310
Helix 21
21
B
86 104Right-handed alpha
Helix 22
22
B
126 148Right-handed alpha
Helix 23
23
B
176 196Right-handed alpha
Helix 24
24
B
197 202Right-handed 310
Helix 25
25
B
210 213Right-handed 310
Helix 26
26
B
215 221Right-handed alpha
Helix 27
27
B
244 249Right-handed alpha
Helix 28
28
B
253 271Right-handed alpha
Helix 29
29
B
285 289Right-handed 310
Helix 30
30
B
296 317Right-handed alpha
Helix 31
31
B
329 335Right-handed 310
Helix 32
32
B
340 352Right-handed alpha
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There are 2 sheets in PDB entry 3VDH. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
66 71parallel
Strand 3
A
106 110parallel
Strand 4
A
155 158parallel
Strand 5
A
205 208parallel
Strand 6
A
233 239parallel
Strand 7
A
276 281parallel
Strand 8
A
321 324parallel
Strand 9
A
22 25parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
66 71parallel
Strand 3
B
106 110parallel
Strand 4
B
155 158parallel
Strand 5
B
205 208parallel
Strand 6
B
233 239parallel
Strand 7
B
276 281parallel
Strand 8
B
321 324parallel
Strand 9
B
22 25parallel
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