Analysis of interatomic Contacts of Structural Units in PDB entry:
3VDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VDQ entry

There are 4 chains in PDB entry 3VDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 260
B
 MET 1ARG 260
C
 MET 1ARG 260
D
 MET 1ARG 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3VDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
38 54Right-handed alpha
Helix 3
3
A
66 82Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
115 133Right-handed alpha
Helix 7
7
A
142 146Right-handed 310
Helix 8
8
A
152 173Right-handed alpha
Helix 9
9
A
190 205Right-handed alpha
Helix 10
10
A
207 220Right-handed alpha
Helix 11
11
A
227 239Right-handed alpha
Helix 12
12
A
240 244Right-handed 310
Helix 13
13
A
256 260Right-handed 310
Helix 14
14
B
14 27Right-handed alpha
Helix 15
15
B
38 54Right-handed alpha
Helix 16
16
B
66 82Right-handed alpha
Helix 17
17
B
98 102Right-handed 310
Helix 18
18
B
103 115Right-handed alpha
Helix 19
19
B
115 133Right-handed alpha
Helix 20
20
B
142 146Right-handed 310
Helix 21
21
B
152 173Right-handed alpha
Helix 22
22
B
190 204Right-handed alpha
Helix 23
23
B
207 220Right-handed alpha
Helix 24
24
B
227 239Right-handed alpha
Helix 25
25
B
240 244Right-handed 310
Helix 26
26
B
256 260Right-handed 310
Helix 27
27
C
14 27Right-handed alpha
Helix 28
28
C
38 54Right-handed alpha
Helix 29
29
C
66 82Right-handed alpha
Helix 30
30
C
98 102Right-handed 310
Helix 31
31
C
103 115Right-handed alpha
Helix 32
32
C
115 133Right-handed alpha
Helix 33
33
C
142 146Right-handed 310
Helix 34
34
C
152 173Right-handed alpha
Helix 35
35
C
190 204Right-handed alpha
Helix 36
36
C
207 220Right-handed alpha
Helix 37
37
C
227 240Right-handed alpha
Helix 38
38
C
241 244Right-handed 310
Helix 39
39
C
256 260Right-handed 310
Helix 40
40
D
14 27Right-handed alpha
Helix 41
41
D
38 54Right-handed alpha
Helix 42
42
D
66 82Right-handed alpha
Helix 43
43
D
98 102Right-handed 310
Helix 44
44
D
103 115Right-handed alpha
Helix 45
45
D
115 133Right-handed alpha
Helix 46
46
D
142 146Right-handed 310
Helix 47
47
D
152 173Right-handed alpha
Helix 48
48
D
190 204Right-handed alpha
Helix 49
49
D
207 220Right-handed alpha
Helix 50
50
D
227 239Right-handed alpha
Helix 51
51
D
240 244Right-handed 310
Helix 52
52
D
256 260Right-handed 310
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There are 4 sheets in PDB entry 3VDQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
30 33parallel
Strand 3
A
6 9parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
250 253parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
30 33parallel
Strand 3
B
6 9parallel
Strand 4
B
86 89parallel
Strand 5
B
135 140parallel
Strand 6
B
178 185parallel
Strand 7
B
250 253parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
30 33parallel
Strand 3
C
6 9parallel
Strand 4
C
86 89parallel
Strand 5
C
135 140parallel
Strand 6
C
178 185parallel
Strand 7
C
250 253parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
30 33parallel
Strand 3
D
6 9parallel
Strand 4
D
86 89parallel
Strand 5
D
135 140parallel
Strand 6
D
178 185parallel
Strand 7
D
250 253parallel
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