Analysis of interatomic Contacts of Structural Units in PDB entry:
3VDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VDX entry

There are 3 chains in PDB entry 3VDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ALA 438
B
 PRO 1ALA 438
C
 PRO 1ALA 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3VDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 40Right-handed 310
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
72 88Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
141 155Right-handed alpha
Helix 6
6
A
155 168Right-handed alpha
Helix 7
7
A
179 192Right-handed alpha
Helix 8
8
A
196 201Right-handed alpha
Helix 9
9
A
202 205Right-handed 310
Helix 10
10
A
232 235Right-handed 310
Helix 11
11
A
236 244Right-handed alpha
Helix 12
12
A
263 295Right-handed alpha
Helix 13
13
A
302 316Right-handed alpha
Helix 14
14
A
321 331Right-handed alpha
Helix 15
15
A
336 351Right-handed alpha
Helix 16
16
A
361 369Right-handed alpha
Helix 17
17
A
378 387Right-handed alpha
Helix 18
18
A
391 400Right-handed alpha
Helix 19
19
A
403 417Right-handed alpha
Helix 20
20
A
422 437Right-handed alpha
Helix 21
21
B
35 38Right-handed 310
Helix 22
22
B
39 50Right-handed alpha
Helix 23
23
B
72 87Right-handed alpha
Helix 24
24
B
100 108Right-handed alpha
Helix 25
25
B
141 155Right-handed alpha
Helix 26
26
B
155 168Right-handed alpha
Helix 27
27
B
179 192Right-handed alpha
Helix 28
28
B
201 205Right-handed 310
Helix 29
29
B
232 235Right-handed 310
Helix 30
30
B
236 244Right-handed alpha
Helix 31
31
B
263 284Right-handed alpha
Helix 32
32
B
286 298Right-handed alpha
Helix 33
33
B
302 316Right-handed alpha
Helix 34
34
B
321 329Right-handed alpha
Helix 35
35
B
336 351Right-handed alpha
Helix 36
36
B
361 367Right-handed alpha
Helix 37
37
B
372 378Right-handed alpha
Helix 38
38
B
378 387Right-handed alpha
Helix 39
39
B
391 397Right-handed alpha
Helix 40
40
B
403 414Right-handed alpha
Helix 41
41
B
423 434Right-handed alpha
Helix 42
42
C
35 40Right-handed 310
Helix 43
43
C
41 50Right-handed alpha
Helix 44
44
C
72 88Right-handed alpha
Helix 45
45
C
99 112Right-handed alpha
Helix 46
46
C
141 155Right-handed alpha
Helix 47
47
C
155 164Right-handed alpha
Helix 48
48
C
164 169Right-handed alpha
Helix 49
49
C
169 174Right-handed alpha
Helix 50
50
C
179 192Right-handed alpha
Helix 51
51
C
194 201Right-handed alpha
Helix 52
52
C
202 205Right-handed 310
Helix 53
53
C
212 216Right-handed 310
Helix 54
54
C
232 235Right-handed 310
Helix 55
55
C
236 244Right-handed alpha
Helix 56
56
C
263 279Right-handed alpha
Helix 57
57
C
279 284Right-handed alpha
Helix 58
58
C
284 296Right-handed alpha
Helix 59
59
C
301 317Right-handed alpha
Helix 60
60
C
321 331Right-handed alpha
Helix 61
61
C
336 350Right-handed alpha
Helix 62
62
C
360 365Right-handed alpha
Helix 63
63
C
372 387Right-handed alpha
Helix 64
64
C
391 399Right-handed alpha
Helix 65
65
C
403 416Right-handed alpha
Helix 66
66
C
422 437Right-handed alpha
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There are 3 sheets in PDB entry 3VDX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
11 20anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
24 29parallel
Strand 5
A
92 97parallel
Strand 6
A
116 122parallel
Strand 7
A
221 225parallel
Strand 8
A
248 252parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
52 56anti-parallel
Strand 4
B
25 29parallel
Strand 5
B
92 97parallel
Strand 6
B
116 122parallel
Strand 7
B
221 225parallel
Strand 8
B
248 252parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
14 20anti-parallel
Strand 3
C
52 56anti-parallel
Strand 4
C
25 29parallel
Strand 5
C
92 97parallel
Strand 6
C
116 122parallel
Strand 7
C
220 225parallel
Strand 8
C
248 252parallel
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