Analysis of interatomic Contacts of Structural Units in PDB entry:
3VE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VE1 entry

There are 3 chains in PDB entry 3VE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 38	PRO 689
B	ASP 3	PRO 679
C	GLN 38	TYR 100

There are 73 helices in PDB entry 3VE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	68	Right-handed 310
Helix 2	2	A	81	90	Right-handed alpha
Helix 3	3	A	267	271	Right-handed 310
Helix 4	4	A	644	647	Right-handed 310
Helix 5	5	B	12	28	Right-handed alpha
Helix 6	6	B	44	54	Right-handed alpha
Helix 7	7	B	63	72	Right-handed alpha
Helix 8	8	B	108	112	Right-handed 310
Helix 9	9	B	128	136	Right-handed alpha
Helix 10	10	B	137	139	Right-handed 310
Helix 11	11	B	145	154	Right-handed alpha
Helix 12	12	B	167	171	Right-handed 310
Helix 13	13	B	186	197	Right-handed alpha
Helix 14	14	B	207	214	Right-handed alpha
Helix 15	15	B	219	221	Right-handed 310
Helix 16	16	B	236	238	Right-handed 310
Helix 17	17	B	259	275	Right-handed alpha
Helix 18	18	B	310	316	Right-handed alpha
Helix 19	19	B	316	328	Right-handed alpha
Helix 20	20	B	348	362	Right-handed alpha
Helix 21	21	B	373	384	Right-handed alpha
Helix 22	22	B	392	402	Right-handed alpha
Helix 23	23	B	417	421	Right-handed 310
Helix 24	24	B	460	472	Right-handed alpha
Helix 25	25	B	475	480	Right-handed alpha
Helix 26	26	B	492	496	Right-handed 310
Helix 27	27	B	501	505	Right-handed 310
Helix 28	28	B	515	527	Right-handed alpha
Helix 29	29	B	536	542	Right-handed alpha
Helix 30	30	B	555	557	Right-handed 310
Helix 31	31	B	572	576	Right-handed 310
Helix 32	32	B	593	609	Right-handed alpha
Helix 33	33	B	642	645	Right-handed 310
Helix 34	34	B	646	652	Right-handed alpha
Helix 35	35	B	652	662	Right-handed alpha
Helix 36	36	B	663	666	Right-handed 310
Helix 37	37	B	668	678	Right-handed alpha
Helix 38	38	C	64	68	Right-handed 310
Helix 39	39	C	81	90	Right-handed alpha
Helix 40	40	C	644	647	Right-handed 310
Helix 41	41	D	12	28	Right-handed alpha
Helix 42	42	D	44	54	Right-handed alpha
Helix 43	43	D	63	72	Right-handed alpha
Helix 44	44	D	108	112	Right-handed 310
Helix 45	45	D	128	136	Right-handed alpha
Helix 46	46	D	137	139	Right-handed 310
Helix 47	47	D	145	154	Right-handed alpha
Helix 48	48	D	167	172	Right-handed 310
Helix 49	49	D	186	197	Right-handed alpha
Helix 50	50	D	207	214	Right-handed alpha
Helix 51	51	D	219	221	Right-handed 310
Helix 52	52	D	236	238	Right-handed 310
Helix 53	53	D	259	275	Right-handed alpha
Helix 54	54	D	310	316	Right-handed alpha
Helix 55	55	D	316	329	Right-handed alpha
Helix 56	56	D	348	362	Right-handed alpha
Helix 57	57	D	373	384	Right-handed alpha
Helix 58	58	D	392	402	Right-handed alpha
Helix 59	59	D	417	421	Right-handed 310
Helix 60	60	D	460	472	Right-handed alpha
Helix 61	61	D	475	480	Right-handed alpha
Helix 62	62	D	492	496	Right-handed 310
Helix 63	63	D	501	505	Right-handed 310
Helix 64	64	D	515	527	Right-handed alpha
Helix 65	65	D	536	542	Right-handed alpha
Helix 66	66	D	555	557	Right-handed 310
Helix 67	67	D	572	576	Right-handed 310
Helix 68	68	D	590	592	Right-handed 310
Helix 69	69	D	593	609	Right-handed alpha
Helix 70	70	D	642	645	Right-handed 310
Helix 71	71	D	646	662	Right-handed alpha
Helix 72	72	D	663	666	Right-handed 310
Helix 73	73	D	668	678	Right-handed alpha

There are 34 sheets in PDB entry 3VE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	160	167	anti-parallel
Strand 4	A	135	142	anti-parallel
Strand 5	A	100	101	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	192	193	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	378	380	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	190	first strand
Strand 2	A	240	247	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	274	285	anti-parallel
Strand 5	A	288	295	anti-parallel
Strand 6	A	312	320	anti-parallel
Strand 7	A	326	332	anti-parallel
Strand 8	A	338	345	anti-parallel
Strand 9	A	179	190	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	396	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	521	529	anti-parallel
Strand 4	A	490	498	anti-parallel
Strand 5	A	477	483	anti-parallel
Strand 6	A	439	443	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	408	first strand
Strand 2	A	411	414	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	560	first strand
Strand 2	A	542	553	anti-parallel
Strand 3	A	677	686	anti-parallel
Strand 4	A	649	656	anti-parallel
Strand 5	A	636	643	anti-parallel
Strand 6	A	606	612	anti-parallel
Strand 7	A	595	603	anti-parallel
Strand 8	A	581	587	anti-parallel
Strand 9	A	570	576	anti-parallel
Strand 10	A	542	553	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	36	41	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	77	85	anti-parallel
Strand 4	B	299	304	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	116	119	parallel
Strand 3	B	202	206	parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	223	226	anti-parallel
Strand 6	B	232	234	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	116	119	parallel
Strand 3	B	202	206	parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	244	247	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	347	first strand
Strand 2	B	366	371	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	586	589	anti-parallel
Strand 3	B	405	411	anti-parallel
Strand 4	B	637	640	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	484	first strand
Strand 2	B	448	451	parallel
Strand 3	B	530	534	parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	559	562	anti-parallel
Strand 6	B	568	570	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	484	first strand
Strand 2	B	448	451	parallel
Strand 3	B	530	534	parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	580	582	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	42	46	anti-parallel
Strand 3	C	160	167	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	100	101	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	192	193	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	237	238	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	378	380	anti-parallel

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There are 9 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	190	first strand
Strand 2	C	240	247	anti-parallel
Strand 3	C	252	260	anti-parallel
Strand 4	C	274	285	anti-parallel
Strand 5	C	288	295	anti-parallel
Strand 6	C	312	320	anti-parallel
Strand 7	C	326	332	anti-parallel
Strand 8	C	338	345	anti-parallel
Strand 9	C	179	190	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	396	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	521	529	anti-parallel
Strand 4	C	490	498	anti-parallel
Strand 5	C	477	483	anti-parallel
Strand 6	C	439	443	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	408	first strand
Strand 2	C	411	414	anti-parallel

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There are 10 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	560	first strand
Strand 2	C	542	553	anti-parallel
Strand 3	C	677	686	anti-parallel
Strand 4	C	649	656	anti-parallel
Strand 5	C	636	643	anti-parallel
Strand 6	C	606	612	anti-parallel
Strand 7	C	595	603	anti-parallel
Strand 8	C	581	587	anti-parallel
Strand 9	C	570	576	anti-parallel
Strand 10	C	542	553	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	36	41	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	77	85	anti-parallel
Strand 4	D	299	304	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	116	119	parallel
Strand 3	D	202	206	parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	223	226	anti-parallel
Strand 6	D	232	234	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	116	119	parallel
Strand 3	D	202	206	parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	244	247	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	347	first strand
Strand 2	D	366	371	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	391	first strand
Strand 2	D	586	589	anti-parallel
Strand 3	D	405	411	anti-parallel
Strand 4	D	637	640	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	484	first strand
Strand 2	D	448	451	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	433	anti-parallel
Strand 5	D	559	562	anti-parallel
Strand 6	D	568	570	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	484	first strand
Strand 2	D	448	451	parallel
Strand 3	D	530	534	parallel
Strand 4	D	426	433	anti-parallel
Strand 5	D	580	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VE1