Analysis of interatomic Contacts of Structural Units in PDB entry:
3VE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VE2 entry

There are 2 chains in PDB entry 3VE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 37	PRO 689
B	ASP 37	GLN 687

There are 8 helices in PDB entry 3VE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	68	Right-handed 310
Helix 2	2	A	81	91	Right-handed alpha
Helix 3	3	A	532	536	Right-handed 310
Helix 4	4	B	64	68	Right-handed 310
Helix 5	5	B	81	91	Right-handed alpha
Helix 6	6	B	150	153	Right-handed 310
Helix 7	7	B	532	536	Right-handed 310
Helix 8	8	B	645	648	Right-handed 310

There are 18 sheets in PDB entry 3VE2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	160	167	anti-parallel
Strand 4	A	135	142	anti-parallel
Strand 5	A	100	101	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	192	193	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	378	380	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	190	first strand
Strand 2	A	240	247	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	274	285	anti-parallel
Strand 5	A	288	295	anti-parallel
Strand 6	A	312	320	anti-parallel
Strand 7	A	326	332	anti-parallel
Strand 8	A	338	345	anti-parallel
Strand 9	A	179	190	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	396	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	521	529	anti-parallel
Strand 4	A	490	498	anti-parallel
Strand 5	A	477	483	anti-parallel
Strand 6	A	440	443	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	408	first strand
Strand 2	A	411	414	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	560	first strand
Strand 2	A	542	553	anti-parallel
Strand 3	A	677	686	anti-parallel
Strand 4	A	649	656	anti-parallel
Strand 5	A	636	643	anti-parallel
Strand 6	A	606	612	anti-parallel
Strand 7	A	596	603	anti-parallel
Strand 8	A	581	587	anti-parallel
Strand 9	A	570	576	anti-parallel
Strand 10	A	542	553	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	160	167	anti-parallel
Strand 4	B	135	142	anti-parallel
Strand 5	B	100	101	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	192	193	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	154	156	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	378	380	anti-parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	190	first strand
Strand 2	B	240	247	anti-parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	274	285	anti-parallel
Strand 5	B	288	295	anti-parallel
Strand 6	B	312	320	anti-parallel
Strand 7	B	326	332	anti-parallel
Strand 8	B	338	345	anti-parallel
Strand 9	B	179	190	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	396	first strand
Strand 2	B	382	388	anti-parallel
Strand 3	B	521	529	anti-parallel
Strand 4	B	490	498	anti-parallel
Strand 5	B	477	483	anti-parallel
Strand 6	B	440	443	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	411	414	anti-parallel

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There are 10 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	560	first strand
Strand 2	B	542	553	anti-parallel
Strand 3	B	677	686	anti-parallel
Strand 4	B	650	657	anti-parallel
Strand 5	B	637	644	anti-parallel
Strand 6	B	606	612	anti-parallel
Strand 7	B	595	603	anti-parallel
Strand 8	B	581	587	anti-parallel
Strand 9	B	570	576	anti-parallel
Strand 10	B	542	553	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VE2