Analysis of interatomic Contacts of Structural Units in PDB entry:
3VED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VED entry

There are 3 chains in PDB entry 3VED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6LEU 313
B
 ALA 6GLY 314
C
 ALA 6GLY 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3VED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 44Right-handed alpha
Helix 2
2
A
45 54Right-handed alpha
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
112 128Right-handed alpha
Helix 5
5
A
159 168Right-handed alpha
Helix 6
6
A
173 177Right-handed 310
Helix 7
7
A
190 197Right-handed alpha
Helix 8
8
A
198 207Right-handed alpha
Helix 9
9
A
225 230Right-handed alpha
Helix 10
10
A
267 280Right-handed alpha
Helix 11
11
A
288 292Right-handed 310
Helix 12
12
A
306 313Right-handed alpha
Helix 13
13
B
31 44Right-handed alpha
Helix 14
14
B
45 54Right-handed alpha
Helix 15
15
B
68 76Right-handed alpha
Helix 16
16
B
112 128Right-handed alpha
Helix 17
17
B
159 168Right-handed alpha
Helix 18
18
B
173 177Right-handed 310
Helix 19
19
B
190 196Right-handed alpha
Helix 20
20
B
198 207Right-handed alpha
Helix 21
21
B
217 221Right-handed 310
Helix 22
22
B
225 230Right-handed alpha
Helix 23
23
B
267 281Right-handed alpha
Helix 24
24
B
288 292Right-handed 310
Helix 25
25
B
306 312Right-handed alpha
Helix 26
26
C
31 44Right-handed alpha
Helix 27
27
C
45 54Right-handed alpha
Helix 28
28
C
68 76Right-handed alpha
Helix 29
29
C
112 128Right-handed alpha
Helix 30
30
C
160 168Right-handed alpha
Helix 31
31
C
173 177Right-handed 310
Helix 32
32
C
190 197Right-handed alpha
Helix 33
33
C
198 207Right-handed alpha
Helix 34
34
C
225 230Right-handed alpha
Helix 35
35
C
267 280Right-handed alpha
Helix 36
36
C
288 292Right-handed 310
Helix 37
37
C
306 313Right-handed alpha
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There are 13 sheets in PDB entry 3VED. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
20 28anti-parallel
Strand 4
A
131 140anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
96 97anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
294 296anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
300 304anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
239 240anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
104 110anti-parallel
Strand 3
B
20 28anti-parallel
Strand 4
B
131 140anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
96 97anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
256 265anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
294 296anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 251first strand
Strand 2
B
256 265anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
300 304anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 67first strand
Strand 2
C
104 110anti-parallel
Strand 3
C
20 28anti-parallel
Strand 4
C
131 140anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
96 97anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 244first strand
Strand 2
C
256 265anti-parallel
Strand 3
C
180 189anti-parallel
Strand 4
C
294 296anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 251first strand
Strand 2
C
256 265anti-parallel
Strand 3
C
180 189anti-parallel
Strand 4
C
300 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il