Analysis of interatomic Contacts of Structural Units in PDB entry:
3VEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VEU entry

There is 1 chain in PDB entry 3VEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ILE 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 3Right-handed alpha
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
135 144Right-handed alpha
Helix 5
5
A
171 173Right-handed 310
Helix 6
6
A
207 213Right-handed 310
Helix 7
7
A
229 243Right-handed alpha
Helix 8
8
A
267 271Right-handed 310
Helix 9
9
A
292 296Right-handed alpha
Helix 10
10
A
302 306Right-handed 310
Helix 11
11
A
325 330Right-handed alpha
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There are 6 sheets in PDB entry 3VEU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
25 32anti-parallel
Strand 4
A
117 120parallel
Strand 5
A
38 41anti-parallel
Strand 6
A
94 106parallel
Strand 7
A
75 86anti-parallel
Strand 8
A
61 70anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
75 86anti-parallel
Strand 4
A
61 70anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
332 337anti-parallel
Strand 4
A
342 348anti-parallel
Strand 5
A
175 183anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
216 218anti-parallel
Strand 3
A
322 324parallel
Strand 4
A
225 228anti-parallel
Strand 5
A
315 318parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
274 279anti-parallel
Strand 4
A
285 291anti-parallel
Strand 5
A
360 366anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il