Analysis of interatomic Contacts of Structural Units in PDB entry:
3VF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VF0 entry

There are 2 chains in PDB entry 3VF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 956GLN 1133
B
 HIS 37ASN 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
962 978Right-handed alpha
Helix 2
2
A
984 1004Right-handed alpha
Helix 3
3
A
1009 1037Right-handed alpha
Helix 4
4
A
1041 1054Right-handed alpha
Helix 5
5
A
1054 1074Right-handed alpha
Helix 6
6
A
1079 1112Right-handed alpha
Helix 7
7
B
40 56Right-handed alpha
Helix 8
8
B
71 79Right-handed alpha
Helix 9
9
B
102 114Right-handed alpha
Helix 10
10
B
144 153Right-handed alpha
Helix 11
11
B
154 156Right-handed 310
Helix 12
12
B
182 194Right-handed alpha
Helix 13
13
B
209 213Right-handed 310
Helix 14
14
B
215 219Right-handed 310
Helix 15
15
B
234 242Right-handed alpha
Helix 16
16
B
271 283Right-handed alpha
Helix 17
17
B
302 319Right-handed alpha
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There are 6 sheets in PDB entry 3VF0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
60 64anti-parallel
Strand 4
B
124 127anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
121 122anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 165first strand
Strand 2
B
172 180anti-parallel
Strand 3
B
133 137anti-parallel
Strand 4
B
204 207anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
201 202anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 255first strand
Strand 2
B
261 268anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
293 296anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
290 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il