Analysis of interatomic Contacts of Structural Units in PDB entry:
3VF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VF1 entry

There are 2 chains in PDB entry 3VF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ILE 679
B	HIS 0	ILE 679

There are 66 helices in PDB entry 3VF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	128	146	Right-handed alpha
Helix 2	2	A	151	155	Right-handed 310
Helix 3	3	A	166	170	Right-handed 310
Helix 4	4	A	171	175	Right-handed 310
Helix 5	5	A	178	184	Right-handed 310
Helix 6	6	A	188	195	Right-handed alpha
Helix 7	7	A	196	201	Right-handed 310
Helix 8	8	A	209	217	Right-handed 310
Helix 9	9	A	227	232	Right-handed alpha
Helix 10	10	A	234	245	Right-handed alpha
Helix 11	11	A	264	269	Right-handed alpha
Helix 12	12	A	270	272	Right-handed 310
Helix 13	13	A	277	284	Right-handed alpha
Helix 14	14	A	293	296	Right-handed 310
Helix 15	15	A	349	371	Right-handed alpha
Helix 16	16	A	377	392	Right-handed alpha
Helix 17	17	A	396	407	Right-handed alpha
Helix 18	18	A	408	420	Right-handed alpha
Helix 19	19	A	425	431	Right-handed alpha
Helix 20	20	A	436	447	Right-handed alpha
Helix 21	21	A	448	449	Right-handed 310
Helix 22	22	A	450	454	Right-handed 310
Helix 23	23	A	455	463	Right-handed alpha
Helix 24	24	A	471	496	Right-handed alpha
Helix 25	25	A	498	504	Right-handed alpha
Helix 26	26	A	505	518	Right-handed alpha
Helix 27	27	A	537	561	Right-handed alpha
Helix 28	28	A	562	568	Right-handed alpha
Helix 29	29	A	569	573	Right-handed 310
Helix 30	30	A	589	597	Right-handed alpha
Helix 31	31	A	599	614	Right-handed alpha
Helix 32	32	A	633	658	Right-handed alpha
Helix 33	33	A	669	673	Right-handed 310
Helix 34	34	B	128	146	Right-handed alpha
Helix 35	35	B	151	155	Right-handed 310
Helix 36	36	B	166	170	Right-handed 310
Helix 37	37	B	171	175	Right-handed 310
Helix 38	38	B	178	184	Right-handed 310
Helix 39	39	B	188	195	Right-handed alpha
Helix 40	40	B	196	201	Right-handed 310
Helix 41	41	B	209	217	Right-handed 310
Helix 42	42	B	227	232	Right-handed alpha
Helix 43	43	B	234	245	Right-handed alpha
Helix 44	44	B	264	269	Right-handed alpha
Helix 45	45	B	270	272	Right-handed 310
Helix 46	46	B	277	284	Right-handed alpha
Helix 47	47	B	293	296	Right-handed 310
Helix 48	48	B	349	371	Right-handed alpha
Helix 49	49	B	377	392	Right-handed alpha
Helix 50	50	B	396	407	Right-handed alpha
Helix 51	51	B	408	420	Right-handed alpha
Helix 52	52	B	425	431	Right-handed alpha
Helix 53	53	B	436	447	Right-handed alpha
Helix 54	54	B	448	449	Right-handed 310
Helix 55	55	B	450	454	Right-handed 310
Helix 56	56	B	455	463	Right-handed alpha
Helix 57	57	B	471	496	Right-handed alpha
Helix 58	58	B	498	504	Right-handed alpha
Helix 59	59	B	505	518	Right-handed alpha
Helix 60	60	B	537	561	Right-handed alpha
Helix 61	61	B	562	568	Right-handed alpha
Helix 62	62	B	569	573	Right-handed 310
Helix 63	63	B	589	597	Right-handed alpha
Helix 64	64	B	599	614	Right-handed alpha
Helix 65	65	B	633	658	Right-handed alpha
Helix 66	66	B	669	673	Right-handed 310

There are 8 sheets in PDB entry 3VF1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	1	9	anti-parallel
Strand 3	A	81	90	anti-parallel
Strand 4	A	97	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	64	71	anti-parallel
Strand 4	A	111	115	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	287	291	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	325	331	anti-parallel
Strand 5	A	342	343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	306	307	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	1	9	anti-parallel
Strand 3	B	81	90	anti-parallel
Strand 4	B	97	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	64	71	anti-parallel
Strand 4	B	111	115	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	287	291	anti-parallel
Strand 3	B	314	319	anti-parallel
Strand 4	B	325	331	anti-parallel
Strand 5	B	342	343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	306	307	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VF1