Analysis of interatomic Contacts of Structural Units in PDB entry:
3VFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VFC entry

There is 1 chain in PDB entry 3VFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TRP 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 5Right-handed 310
Helix 2
2
A
56 71Right-handed alpha
Helix 3
3
A
77 90Right-handed alpha
Helix 4
4
A
105 130Right-handed alpha
Helix 5
5
A
132 137Right-handed 310
Helix 6
6
A
171 187Right-handed alpha
Helix 7
7
A
199 214Right-handed alpha
Helix 8
8
A
228 239Right-handed alpha
Helix 9
9
A
252 263Right-handed alpha
Helix 10
10
A
275 277Right-handed 310
Helix 11
11
A
278 286Right-handed alpha
Helix 12
12
A
294 299Right-handed alpha
Helix 13
13
A
300 315Right-handed alpha
Helix 14
14
A
326 339Right-handed alpha
Helix 15
15
A
350 354Right-handed 310
Helix 16
16
A
384 399Right-handed alpha
Helix 17
17
A
404 413Right-handed alpha
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There are 4 sheets in PDB entry 3VFC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 19first strand
Strand 2
A
33 43anti-parallel
Strand 3
A
48 53anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
28 29anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
366 367anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
191 194parallel
Strand 3
A
219 222parallel
Strand 4
A
245 247parallel
Strand 5
A
267 269parallel
Strand 6
A
290 293parallel
Strand 7
A
317 320parallel
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