Analysis of interatomic Contacts of Structural Units in PDB entry:
3VFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VFD entry

There is 1 chain in PDB entry 3VFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 324GLY 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
327 331Right-handed 310
Helix 2
2
A
340 344Right-handed 310
Helix 3
3
A
347 358Right-handed alpha
Helix 4
4
A
358 364Right-handed alpha
Helix 5
5
A
369 373Right-handed 310
Helix 6
6
A
387 399Right-handed alpha
Helix 7
7
A
420 433Right-handed alpha
Helix 8
8
A
443 447Right-handed 310
Helix 9
9
A
457 473Right-handed alpha
Helix 10
10
A
489 493Right-handed 310
Helix 11
11
A
494 499Right-handed alpha
Helix 12
12
A
511 524Right-handed alpha
Helix 13
13
A
531 542Right-handed alpha
Helix 14
14
A
546 558Right-handed alpha
Helix 15
15
A
559 564Right-handed alpha
Helix 16
16
A
582 593Right-handed alpha
Helix 17
17
A
598 612Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3VFD.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
436 441parallel
Strand 3
A
481 487parallel
Strand 4
A
377 381parallel
Strand 5
A
503 506parallel
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