Analysis of interatomic Contacts of Structural Units in PDB entry:
3VFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VFF entry

There are 4 chains in PDB entry 3VFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29ALA 293
B
 ASP 29ALA 293
C
 ASP 29ALA 293
D
 ASP 29ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3VFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 41Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
72 86Right-handed alpha
Helix 4
4
A
87 92Right-handed 310
Helix 5
5
A
108 112Right-handed 310
Helix 6
6
A
119 129Right-handed alpha
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
145 145Right-handed 310
Helix 9
9
A
145 154Right-handed alpha
Helix 10
10
A
182 195Right-handed alpha
Helix 11
11
A
200 213Right-handed alpha
Helix 12
12
A
220 224Right-handed 310
Helix 13
13
A
267 271Right-handed 310
Helix 14
14
A
277 293Right-handed alpha
Helix 15
15
B
30 41Right-handed alpha
Helix 16
16
B
69 71Right-handed 310
Helix 17
17
B
72 83Right-handed alpha
Helix 18
18
B
87 92Right-handed 310
Helix 19
19
B
98 102Right-handed 310
Helix 20
20
B
108 113Right-handed 310
Helix 21
21
B
119 129Right-handed alpha
Helix 22
22
B
131 141Right-handed alpha
Helix 23
23
B
142 143Right-handed 310
Helix 24
24
B
144 145Right-handed 310
Helix 25
25
B
145 155Right-handed alpha
Helix 26
26
B
182 195Right-handed alpha
Helix 27
27
B
200 213Right-handed alpha
Helix 28
28
B
220 225Right-handed alpha
Helix 29
29
B
267 271Right-handed 310
Helix 30
30
B
277 293Right-handed alpha
Helix 31
31
C
30 42Right-handed alpha
Helix 32
32
C
69 71Right-handed 310
Helix 33
33
C
72 86Right-handed alpha
Helix 34
34
C
87 92Right-handed 310
Helix 35
35
C
98 102Right-handed 310
Helix 36
36
C
106 111Right-handed alpha
Helix 37
37
C
119 130Right-handed alpha
Helix 38
38
C
131 143Right-handed alpha
Helix 39
39
C
144 145Right-handed 310
Helix 40
40
C
145 155Right-handed alpha
Helix 41
41
C
182 195Right-handed alpha
Helix 42
42
C
200 213Right-handed alpha
Helix 43
43
C
267 271Right-handed 310
Helix 44
44
C
277 293Right-handed alpha
Helix 45
45
D
30 40Right-handed alpha
Helix 46
46
D
69 71Right-handed 310
Helix 47
47
D
72 86Right-handed alpha
Helix 48
48
D
87 92Right-handed 310
Helix 49
49
D
98 102Right-handed 310
Helix 50
50
D
108 112Right-handed 310
Helix 51
51
D
119 129Right-handed alpha
Helix 52
52
D
131 141Right-handed alpha
Helix 53
53
D
144 145Right-handed 310
Helix 54
54
D
145 154Right-handed alpha
Helix 55
55
D
168 172Right-handed 310
Helix 56
56
D
182 195Right-handed alpha
Helix 57
57
D
200 213Right-handed alpha
Helix 58
58
D
220 225Right-handed alpha
Helix 59
59
D
267 274Right-handed 310
Helix 60
60
D
277 293Right-handed alpha
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There are 12 sheets in PDB entry 3VFF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
230 238anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
258 266anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
230 237anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
258 266anti-parallel
Strand 4
C
243 251anti-parallel
Strand 5
C
230 238anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
44 49anti-parallel
Strand 3
D
258 266anti-parallel
Strand 4
D
243 251anti-parallel
Strand 5
D
230 238anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
180 181anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
117 118anti-parallel
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