Analysis of interatomic Contacts of Structural Units in PDB entry:
3VFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VFQ entry

There is 1 chain in PDB entry 3VFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 791ASN 1191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
832 842Right-handed alpha
Helix 2
2
A
842 856Right-handed alpha
Helix 3
3
A
889 911Right-handed alpha
Helix 4
4
A
929 947Right-handed alpha
Helix 5
5
A
963 978Right-handed alpha
Helix 6
6
A
1022 1026Right-handed 310
Helix 7
7
A
1044 1055Right-handed alpha
Helix 8
8
A
1056 1066Right-handed alpha
Helix 9
9
A
1101 1122Right-handed alpha
Helix 10
10
A
1140 1159Right-handed alpha
Helix 11
11
A
1175 1191Right-handed alpha
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There are 2 sheets in PDB entry 3VFQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 799first strand
Strand 2
A
802 808anti-parallel
Strand 3
A
956 961parallel
Strand 4
A
915 918parallel
Strand 5
A
818 823parallel
Strand 6
A
876 881parallel
Strand 7
A
863 868anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1009first strand
Strand 2
A
1015 1019anti-parallel
Strand 3
A
1166 1170parallel
Strand 4
A
1126 1130parallel
Strand 5
A
1030 1034parallel
Strand 6
A
1088 1092parallel
Strand 7
A
1076 1080anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il