Analysis of interatomic Contacts of Structural Units in PDB entry:
3VG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VG1 entry

There is 1 chain in PDB entry 3VG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 57Right-handed 310
Helix 2
2
A
123 127Right-handed 310
Helix 3
3
A
135 144Right-handed alpha
Helix 4
4
A
168 170Right-handed 310
Helix 5
5
A
204 210Right-handed 310
Helix 6
6
A
226 240Right-handed alpha
Helix 7
7
A
264 268Right-handed 310
Helix 8
8
A
289 293Right-handed alpha
Helix 9
9
A
299 303Right-handed 310
Helix 10
10
A
322 327Right-handed alpha
Helix 11
11
A
335 337Right-handed 310
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There are 5 sheets in PDB entry 3VG1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
14 20anti-parallel
Strand 4
A
6 8anti-parallel
Strand 5
A
159 164anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
329 334anti-parallel
Strand 8
A
339 345anti-parallel
Strand 9
A
172 180anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
94 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
117 120anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
14 20anti-parallel
Strand 8
A
6 8anti-parallel
Strand 9
A
159 164anti-parallel
Strand 10
A
150 155anti-parallel
Strand 11
A
329 334anti-parallel
Strand 12
A
339 345anti-parallel
Strand 13
A
172 180anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
213 215anti-parallel
Strand 3
A
319 321parallel
Strand 4
A
222 225anti-parallel
Strand 5
A
312 315parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
282 288anti-parallel
Strand 5
A
357 363anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
306 310anti-parallel
Strand 3
A
294 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il