Analysis of interatomic Contacts of Structural Units in PDB entry:
3VG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VG8 entry

There are 10 chains in PDB entry 3VG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLY 9	GLU 114
H	GLU 5	TYR 116
I	GLU 5	GLY 113
J	ASN 2	TYR 116
A	GLY 9	GLY 113
B	MSE 1	TYR 116
C	LEU 7	PRO 115
D	GLY 9	TYR 116
E	GLU 5	GLY 113
F	ASN 2	TYR 116

There are 43 helices in PDB entry 3VG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	G	24	28	Right-handed 310
Helix 2	2	G	51	56	Right-handed alpha
Helix 3	3	G	64	72	Right-handed alpha
Helix 4	4	G	103	111	Right-handed alpha
Helix 5	5	H	25	28	Right-handed 310
Helix 6	6	H	51	56	Right-handed alpha
Helix 7	7	H	64	70	Right-handed alpha
Helix 8	8	H	103	112	Right-handed alpha
Helix 9	9	I	24	28	Right-handed 310
Helix 10	10	I	51	56	Right-handed alpha
Helix 11	11	I	64	72	Right-handed alpha
Helix 12	12	I	103	111	Right-handed alpha
Helix 13	13	J	3	11	Right-handed alpha
Helix 14	14	J	24	28	Right-handed 310
Helix 15	15	J	51	56	Right-handed alpha
Helix 16	16	J	64	72	Right-handed alpha
Helix 17	17	J	103	111	Right-handed alpha
Helix 18	18	A	24	28	Right-handed 310
Helix 19	19	A	51	56	Right-handed alpha
Helix 20	20	A	64	71	Right-handed alpha
Helix 21	21	A	103	111	Right-handed alpha
Helix 22	22	B	2	11	Right-handed alpha
Helix 23	23	B	25	28	Right-handed 310
Helix 24	24	B	51	56	Right-handed alpha
Helix 25	25	B	64	72	Right-handed alpha
Helix 26	26	B	103	111	Right-handed alpha
Helix 27	27	C	24	28	Right-handed 310
Helix 28	28	C	51	56	Right-handed alpha
Helix 29	29	C	64	71	Right-handed alpha
Helix 30	30	C	103	111	Right-handed alpha
Helix 31	31	D	25	28	Right-handed 310
Helix 32	32	D	51	56	Right-handed alpha
Helix 33	33	D	64	70	Right-handed alpha
Helix 34	34	D	103	111	Right-handed alpha
Helix 35	35	E	24	28	Right-handed 310
Helix 36	36	E	51	56	Right-handed alpha
Helix 37	37	E	64	72	Right-handed alpha
Helix 38	38	E	103	111	Right-handed alpha
Helix 39	39	F	3	11	Right-handed alpha
Helix 40	40	F	25	28	Right-handed 310
Helix 41	41	F	51	56	Right-handed alpha
Helix 42	42	F	64	70	Right-handed alpha
Helix 43	43	F	103	111	Right-handed alpha

There are 10 sheets in PDB entry 3VG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	33	37	anti-parallel
Strand 3	G	41	50	anti-parallel
Strand 4	G	94	100	anti-parallel
Strand 5	G	78	83	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	H	78	84	anti-parallel
Strand 3	H	94	100	anti-parallel
Strand 4	H	42	50	anti-parallel
Strand 5	H	33	36	anti-parallel
Strand 6	H	20	23	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	19	22	anti-parallel
Strand 3	I	33	36	anti-parallel
Strand 4	I	42	50	anti-parallel
Strand 5	I	94	100	anti-parallel
Strand 6	I	78	83	anti-parallel
Strand 7	J	60	63	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	63	first strand
Strand 2	J	78	84	anti-parallel
Strand 3	J	94	100	anti-parallel
Strand 4	J	42	50	anti-parallel
Strand 5	J	33	36	anti-parallel
Strand 6	J	20	22	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	33	36	anti-parallel
Strand 3	A	42	50	anti-parallel
Strand 4	A	94	100	anti-parallel
Strand 5	A	78	83	anti-parallel
Strand 6	B	60	63	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	42	50	anti-parallel
Strand 5	B	33	36	anti-parallel
Strand 6	B	20	23	anti-parallel
Strand 7	C	8	9	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	33	36	anti-parallel
Strand 3	C	42	50	anti-parallel
Strand 4	C	94	100	anti-parallel
Strand 5	C	78	83	anti-parallel
Strand 6	D	60	63	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	D	78	84	anti-parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	42	50	anti-parallel
Strand 5	D	33	36	anti-parallel
Strand 6	D	20	23	anti-parallel
Strand 7	E	8	9	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	19	22	anti-parallel
Strand 3	E	33	36	anti-parallel
Strand 4	E	42	50	anti-parallel
Strand 5	E	94	100	anti-parallel
Strand 6	E	78	83	anti-parallel
Strand 7	F	60	63	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	F	78	84	anti-parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	42	50	anti-parallel
Strand 5	F	33	36	anti-parallel
Strand 6	F	20	23	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VG8