Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGF entry

There is 1 chain in PDB entry 3VGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3VGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 102Right-handed 310
Helix 2
2
A
108 113Right-handed alpha
Helix 3
3
A
117 124Right-handed alpha
Helix 4
4
A
124 132Right-handed alpha
Helix 5
5
A
162 164Right-handed 310
Helix 6
6
A
165 180Right-handed alpha
Helix 7
7
A
199 203Right-handed 310
Helix 8
8
A
225 245Right-handed alpha
Helix 9
9
A
253 257Right-handed 310
Helix 10
10
A
264 276Right-handed alpha
Helix 11
11
A
288 292Right-handed 310
Helix 12
12
A
294 298Right-handed 310
Helix 13
13
A
307 320Right-handed alpha
Helix 14
14
A
323 329Right-handed 310
Helix 15
15
A
331 342Right-handed alpha
Helix 16
16
A
365 367Right-handed 310
Helix 17
17
A
375 381Right-handed alpha
Helix 18
18
A
387 391Right-handed 310
Helix 19
19
A
393 406Right-handed alpha
Helix 20
20
A
416 420Right-handed 310
Helix 21
21
A
433 449Right-handed alpha
Helix 22
22
A
456 463Right-handed alpha
Helix 23
23
A
470 487Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3VGF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
24 27anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
24 27anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
135 138parallel
Strand 3
A
183 188parallel
Strand 4
A
248 251parallel
Strand 5
A
279 283parallel
Strand 6
A
304 306parallel
Strand 7
A
369 371parallel
Strand 8
A
410 414parallel
Strand 9
A
104 107parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
156 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
216 219anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
355 357anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
503 507anti-parallel
Strand 3
A
512 516anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
528 533anti-parallel
Strand 6
A
541 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 524first strand
Strand 2
A
545 549anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il