Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGJ entry

There are 2 chains in PDB entry 3VGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20THR 372
B
 ALA 18LYS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3VGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 38Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
96 103Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
109 127Right-handed alpha
Helix 7
7
A
139 146Right-handed alpha
Helix 8
8
A
146 159Right-handed alpha
Helix 9
9
A
162 168Right-handed alpha
Helix 10
10
A
169 174Right-handed 310
Helix 11
11
A
183 199Right-handed alpha
Helix 12
12
A
207 209Right-handed 310
Helix 13
13
A
210 225Right-handed alpha
Helix 14
14
A
262 273Right-handed alpha
Helix 15
15
A
283 292Right-handed alpha
Helix 16
16
A
292 298Right-handed alpha
Helix 17
17
A
305 309Right-handed 310
Helix 18
18
A
316 326Right-handed alpha
Helix 19
19
A
330 356Right-handed alpha
Helix 20
20
A
356 369Right-handed alpha
Helix 21
21
B
20 36Right-handed alpha
Helix 22
22
B
43 52Right-handed alpha
Helix 23
23
B
74 86Right-handed alpha
Helix 24
24
B
96 103Right-handed alpha
Helix 25
25
B
104 108Right-handed 310
Helix 26
26
B
109 125Right-handed alpha
Helix 27
27
B
139 146Right-handed alpha
Helix 28
28
B
146 159Right-handed alpha
Helix 29
29
B
162 168Right-handed alpha
Helix 30
30
B
169 174Right-handed 310
Helix 31
31
B
183 199Right-handed alpha
Helix 32
32
B
207 209Right-handed 310
Helix 33
33
B
210 224Right-handed alpha
Helix 34
34
B
262 272Right-handed alpha
Helix 35
35
B
283 292Right-handed alpha
Helix 36
36
B
292 298Right-handed alpha
Helix 37
37
B
305 309Right-handed 310
Helix 38
38
B
316 326Right-handed alpha
Helix 39
39
B
330 356Right-handed alpha
Helix 40
40
B
356 368Right-handed alpha
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There are 4 sheets in PDB entry 3VGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
203 204parallel
Strand 4
A
58 63parallel
Strand 5
A
90 95parallel
Strand 6
A
134 138parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
312 314anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
203 204parallel
Strand 4
B
57 63parallel
Strand 5
B
89 95parallel
Strand 6
B
134 138parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 302first strand
Strand 2
B
312 314anti-parallel
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