Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGL entry

There is 1 chain in PDB entry 3VGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLY 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3VGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 53Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
105 117Right-handed alpha
Helix 4
4
A
154 158Right-handed 310
Helix 5
5
A
174 178Right-handed 310
Helix 6
6
A
180 195Right-handed alpha
Helix 7
7
A
196 198Right-handed 310
Helix 8
8
A
199 205Right-handed alpha
Helix 9
9
A
214 224Right-handed alpha
Helix 10
10
A
226 252Right-handed alpha
Helix 11
11
A
260 265Right-handed 310
Helix 12
12
A
266 281Right-handed alpha
Helix 13
13
A
283 287Right-handed 310
Helix 14
14
A
297 299Right-handed 310
Helix 15
15
A
300 312Right-handed alpha
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There are 3 sheets in PDB entry 3VGL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
57 64parallel
Strand 5
A
100 104parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
75 77anti-parallel
Strand 3
A
84 86anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
134 140anti-parallel
Strand 3
A
125 130anti-parallel
Strand 4
A
255 259parallel
Strand 5
A
291 294parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il