Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGN entry

There are 2 chains in PDB entry 3VGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 127
B
 MET 1VAL 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3VGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
24 31Right-handed alpha
Helix 3
3
A
49 62Right-handed alpha
Helix 4
4
A
121 123Right-handed 310
Helix 5
5
B
5 23Right-handed alpha
Helix 6
6
B
24 31Right-handed alpha
Helix 7
7
B
49 62Right-handed alpha
Helix 8
8
B
121 123Right-handed 310
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There are 4 sheets in PDB entry 3VGN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
113 119parallel
Strand 4
A
95 107anti-parallel
Strand 5
A
81 92anti-parallel
Strand 6
A
75 76anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
81 92anti-parallel
Strand 3
A
95 107anti-parallel
Strand 4
A
125 126anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
113 119parallel
Strand 4
B
96 107anti-parallel
Strand 5
B
81 91anti-parallel
Strand 6
B
75 76anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
81 91anti-parallel
Strand 3
B
96 107anti-parallel
Strand 4
B
125 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il