Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGP entry

There is 1 chain in PDB entry 3VGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 428SER 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3VGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
432 448Right-handed alpha
Helix 2
2
A
467 472Right-handed alpha
Helix 3
3
A
484 497Right-handed alpha
Helix 4
4
A
500 512Right-handed alpha
Helix 5
5
A
519 523Right-handed 310
Helix 6
6
A
531 539Right-handed alpha
Helix 7
7
A
542 546Right-handed 310
Helix 8
8
A
547 557Right-handed alpha
Helix 9
9
A
558 565Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3VGP.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
515 518parallel
Strand 3
A
583 588anti-parallel
Strand 4
A
574 580anti-parallel
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