Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGU entry

There are 8 chains in PDB entry 3VGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 141
B
 ALA 2ARG 141
C
 ALA 2ARG 141
D
 ALA 2ARG 141
E
 ALA 2ARG 141
F
 ALA 2ARG 141
G
 ALA 2ARG 141
H
 ALA 2ARG 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3VGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
19 30Right-handed alpha
Helix 3
3
A
43 51Right-handed alpha
Helix 4
4
A
52 55Right-handed 310
Helix 5
5
A
59 68Right-handed alpha
Helix 6
6
A
81 91Right-handed alpha
Helix 7
7
A
94 98Right-handed 310
Helix 8
8
A
102 108Right-handed alpha
Helix 9
9
A
121 133Right-handed alpha
Helix 10
10
A
134 138Right-handed 310
Helix 11
11
B
11 17Right-handed alpha
Helix 12
12
B
19 30Right-handed alpha
Helix 13
13
B
43 51Right-handed alpha
Helix 14
14
B
52 55Right-handed 310
Helix 15
15
B
59 68Right-handed alpha
Helix 16
16
B
81 91Right-handed alpha
Helix 17
17
B
94 98Right-handed 310
Helix 18
18
B
102 108Right-handed alpha
Helix 19
19
B
121 133Right-handed alpha
Helix 20
20
B
134 138Right-handed 310
Helix 21
21
C
11 17Right-handed alpha
Helix 22
22
C
19 30Right-handed alpha
Helix 23
23
C
43 51Right-handed alpha
Helix 24
24
C
52 55Right-handed 310
Helix 25
25
C
59 67Right-handed alpha
Helix 26
26
C
81 91Right-handed alpha
Helix 27
27
C
94 98Right-handed 310
Helix 28
28
C
102 108Right-handed alpha
Helix 29
29
C
121 133Right-handed alpha
Helix 30
30
C
134 138Right-handed 310
Helix 31
31
D
11 17Right-handed alpha
Helix 32
32
D
19 30Right-handed alpha
Helix 33
33
D
43 51Right-handed alpha
Helix 34
34
D
52 55Right-handed 310
Helix 35
35
D
59 69Right-handed alpha
Helix 36
36
D
81 91Right-handed alpha
Helix 37
37
D
102 108Right-handed alpha
Helix 38
38
D
121 133Right-handed alpha
Helix 39
39
D
134 138Right-handed 310
Helix 40
40
E
11 17Right-handed alpha
Helix 41
41
E
19 30Right-handed alpha
Helix 42
42
E
43 51Right-handed alpha
Helix 43
43
E
52 55Right-handed 310
Helix 44
44
E
59 68Right-handed alpha
Helix 45
45
E
81 91Right-handed alpha
Helix 46
46
E
94 98Right-handed 310
Helix 47
47
E
102 108Right-handed alpha
Helix 48
48
E
121 133Right-handed alpha
Helix 49
49
E
134 138Right-handed 310
Helix 50
50
F
11 17Right-handed alpha
Helix 51
51
F
19 30Right-handed alpha
Helix 52
52
F
43 51Right-handed alpha
Helix 53
53
F
52 55Right-handed 310
Helix 54
54
F
59 68Right-handed alpha
Helix 55
55
F
81 91Right-handed alpha
Helix 56
56
F
94 98Right-handed 310
Helix 57
57
F
102 108Right-handed alpha
Helix 58
58
F
121 133Right-handed alpha
Helix 59
59
F
134 138Right-handed 310
Helix 60
60
G
11 17Right-handed alpha
Helix 61
61
G
19 30Right-handed alpha
Helix 62
62
G
43 51Right-handed alpha
Helix 63
63
G
52 55Right-handed 310
Helix 64
64
G
59 68Right-handed alpha
Helix 65
65
G
81 91Right-handed alpha
Helix 66
66
G
94 98Right-handed 310
Helix 67
67
G
102 108Right-handed alpha
Helix 68
68
G
121 133Right-handed alpha
Helix 69
69
G
134 138Right-handed 310
Helix 70
70
H
11 17Right-handed alpha
Helix 71
71
H
19 30Right-handed alpha
Helix 72
72
H
43 51Right-handed alpha
Helix 73
73
H
52 55Right-handed 310
Helix 74
74
H
60 67Right-handed alpha
Helix 75
75
H
81 91Right-handed alpha
Helix 76
76
H
102 108Right-handed alpha
Helix 77
77
H
121 133Right-handed alpha
Helix 78
78
H
134 138Right-handed 310
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There are 8 sheets in PDB entry 3VGU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
72 80anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
116 118anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 40first strand
Strand 2
B
72 80anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
116 118anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 40first strand
Strand 2
C
72 80anti-parallel
Strand 3
C
3 10anti-parallel
Strand 4
C
116 118anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 40first strand
Strand 2
D
72 80anti-parallel
Strand 3
D
3 10anti-parallel
Strand 4
D
116 118anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 40first strand
Strand 2
E
72 80anti-parallel
Strand 3
E
3 10anti-parallel
Strand 4
E
116 118anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 40first strand
Strand 2
F
72 80anti-parallel
Strand 3
F
3 10anti-parallel
Strand 4
F
116 118anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
33 40first strand
Strand 2
G
72 80anti-parallel
Strand 3
G
3 10anti-parallel
Strand 4
G
116 118anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 41first strand
Strand 2
H
71 80anti-parallel
Strand 3
H
3 10anti-parallel
Strand 4
H
116 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il