Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VGV entry

There are 16 chains in PDB entry 3VGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 141
B	ALA 2	ARG 141
C	ALA 2	ARG 141
D	ALA 2	ARG 141
E	ALA 2	ARG 141
F	ALA 2	ARG 141
G	ALA 2	ARG 141
H	ALA 2	ARG 141
I	ALA 2	ARG 141
J	ALA 2	ARG 141
K	ALA 2	ARG 141
L	ALA 2	ARG 141
M	ALA 2	ARG 141
N	ALA 2	ARG 141
O	ALA 2	ARG 141
P	ALA 2	ARG 141

There are143 helices in PDB entry 3VGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	17	Right-handed alpha
Helix 2	2	A	19	31	Right-handed alpha
Helix 3	3	A	43	51	Right-handed alpha
Helix 4	4	A	60	67	Right-handed alpha
Helix 5	5	A	81	91	Right-handed alpha
Helix 6	6	A	102	108	Right-handed alpha
Helix 7	7	A	121	133	Right-handed alpha
Helix 8	8	A	134	138	Right-handed 310
Helix 9	9	B	11	17	Right-handed alpha
Helix 10	10	B	19	30	Right-handed alpha
Helix 11	11	B	43	51	Right-handed alpha
Helix 12	12	B	52	55	Right-handed 310
Helix 13	13	B	59	68	Right-handed alpha
Helix 14	14	B	81	91	Right-handed alpha
Helix 15	15	B	94	98	Right-handed 310
Helix 16	16	B	102	108	Right-handed alpha
Helix 17	17	B	121	133	Right-handed alpha
Helix 18	18	B	134	138	Right-handed 310
Helix 19	19	C	11	17	Right-handed alpha
Helix 20	20	C	19	31	Right-handed alpha
Helix 21	21	C	43	51	Right-handed alpha
Helix 22	22	C	52	55	Right-handed 310
Helix 23	23	C	59	67	Right-handed alpha
Helix 24	24	C	81	91	Right-handed alpha
Helix 25	25	C	94	98	Right-handed 310
Helix 26	26	C	102	108	Right-handed alpha
Helix 27	27	C	121	133	Right-handed alpha
Helix 28	28	C	134	138	Right-handed 310
Helix 29	29	D	11	17	Right-handed alpha
Helix 30	30	D	19	30	Right-handed alpha
Helix 31	31	D	43	51	Right-handed alpha
Helix 32	32	D	52	55	Right-handed 310
Helix 33	33	D	60	68	Right-handed alpha
Helix 34	34	D	81	91	Right-handed alpha
Helix 35	35	D	102	108	Right-handed alpha
Helix 36	36	D	121	133	Right-handed alpha
Helix 37	37	D	134	138	Right-handed 310
Helix 38	38	E	11	17	Right-handed alpha
Helix 39	39	E	19	30	Right-handed alpha
Helix 40	40	E	43	51	Right-handed alpha
Helix 41	41	E	59	68	Right-handed alpha
Helix 42	42	E	81	91	Right-handed alpha
Helix 43	43	E	94	98	Right-handed 310
Helix 44	44	E	102	108	Right-handed alpha
Helix 45	45	E	121	133	Right-handed alpha
Helix 46	46	F	11	17	Right-handed alpha
Helix 47	47	F	19	30	Right-handed alpha
Helix 48	48	F	43	51	Right-handed alpha
Helix 49	49	F	52	55	Right-handed 310
Helix 50	50	F	59	69	Right-handed alpha
Helix 51	51	F	81	91	Right-handed alpha
Helix 52	52	F	94	98	Right-handed 310
Helix 53	53	F	102	108	Right-handed alpha
Helix 54	54	F	121	133	Right-handed alpha
Helix 55	55	F	134	138	Right-handed 310
Helix 56	56	G	11	17	Right-handed alpha
Helix 57	57	G	19	30	Right-handed alpha
Helix 58	58	G	43	51	Right-handed alpha
Helix 59	59	G	52	55	Right-handed 310
Helix 60	60	G	59	68	Right-handed alpha
Helix 61	61	G	81	91	Right-handed alpha
Helix 62	62	G	102	108	Right-handed alpha
Helix 63	63	G	121	133	Right-handed alpha
Helix 64	64	G	134	138	Right-handed 310
Helix 65	65	H	11	17	Right-handed alpha
Helix 66	66	H	19	30	Right-handed alpha
Helix 67	67	H	43	51	Right-handed alpha
Helix 68	68	H	52	55	Right-handed 310
Helix 69	69	H	59	68	Right-handed alpha
Helix 70	70	H	81	91	Right-handed alpha
Helix 71	71	H	102	108	Right-handed alpha
Helix 72	72	H	121	133	Right-handed alpha
Helix 73	73	I	11	17	Right-handed alpha
Helix 74	74	I	19	30	Right-handed alpha
Helix 75	75	I	43	51	Right-handed alpha
Helix 76	76	I	52	55	Right-handed 310
Helix 77	77	I	59	70	Right-handed alpha
Helix 78	78	I	81	91	Right-handed alpha
Helix 79	79	I	102	107	Right-handed alpha
Helix 80	80	I	121	133	Right-handed alpha
Helix 81	81	I	134	138	Right-handed 310
Helix 82	82	J	11	17	Right-handed alpha
Helix 83	83	J	19	31	Right-handed alpha
Helix 84	84	J	43	51	Right-handed alpha
Helix 85	85	J	52	55	Right-handed 310
Helix 86	86	J	61	70	Right-handed alpha
Helix 87	87	J	81	91	Right-handed alpha
Helix 88	88	J	103	108	Right-handed alpha
Helix 89	89	J	121	133	Right-handed alpha
Helix 90	90	J	134	138	Right-handed 310
Helix 91	91	K	11	17	Right-handed alpha
Helix 92	92	K	19	29	Right-handed alpha
Helix 93	93	K	43	51	Right-handed alpha
Helix 94	94	K	52	55	Right-handed 310
Helix 95	95	K	58	68	Right-handed alpha
Helix 96	96	K	81	91	Right-handed alpha
Helix 97	97	K	94	98	Right-handed 310
Helix 98	98	K	103	108	Right-handed alpha
Helix 99	99	K	121	133	Right-handed alpha
Helix 100	100	K	134	138	Right-handed 310
Helix 101	101	L	11	18	Right-handed alpha
Helix 102	102	L	19	29	Right-handed alpha
Helix 103	103	L	43	51	Right-handed alpha
Helix 104	104	L	52	55	Right-handed 310
Helix 105	105	L	59	67	Right-handed alpha
Helix 106	106	L	81	91	Right-handed alpha
Helix 107	107	L	94	98	Right-handed 310
Helix 108	108	L	102	108	Right-handed alpha
Helix 109	109	L	121	133	Right-handed alpha
Helix 110	110	L	134	138	Right-handed 310
Helix 111	111	M	11	17	Right-handed alpha
Helix 112	112	M	19	30	Right-handed alpha
Helix 113	113	M	43	51	Right-handed alpha
Helix 114	114	M	52	55	Right-handed 310
Helix 115	115	M	59	67	Right-handed alpha
Helix 116	116	M	81	91	Right-handed alpha
Helix 117	117	M	94	98	Right-handed 310
Helix 118	118	M	102	108	Right-handed alpha
Helix 119	119	M	123	133	Right-handed alpha
Helix 120	120	N	11	17	Right-handed alpha
Helix 121	121	N	19	31	Right-handed alpha
Helix 122	122	N	43	49	Right-handed alpha
Helix 123	123	N	81	91	Right-handed alpha
Helix 124	124	N	102	108	Right-handed alpha
Helix 125	125	N	121	133	Right-handed alpha
Helix 126	126	N	134	138	Right-handed 310
Helix 127	127	O	11	17	Right-handed alpha
Helix 128	128	O	19	30	Right-handed alpha
Helix 129	129	O	43	51	Right-handed alpha
Helix 130	130	O	52	55	Right-handed 310
Helix 131	131	O	81	91	Right-handed alpha
Helix 132	132	O	102	108	Right-handed alpha
Helix 133	133	O	121	133	Right-handed alpha
Helix 134	134	O	134	138	Right-handed 310
Helix 135	135	P	11	17	Right-handed alpha
Helix 136	136	P	19	30	Right-handed alpha
Helix 137	137	P	43	51	Right-handed alpha
Helix 138	138	P	52	55	Right-handed 310
Helix 139	139	P	59	67	Right-handed alpha
Helix 140	140	P	81	91	Right-handed alpha
Helix 141	141	P	94	98	Right-handed 310
Helix 142	142	P	102	108	Right-handed alpha
Helix 143	143	P	121	133	Right-handed alpha

There are 16 sheets in PDB entry 3VGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	40	first strand
Strand 2	A	72	80	anti-parallel
Strand 3	A	3	10	anti-parallel
Strand 4	A	116	118	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	40	first strand
Strand 2	B	72	80	anti-parallel
Strand 3	B	3	10	anti-parallel
Strand 4	B	116	118	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	40	first strand
Strand 2	C	72	80	anti-parallel
Strand 3	C	3	10	anti-parallel
Strand 4	C	116	118	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	40	first strand
Strand 2	D	72	80	anti-parallel
Strand 3	D	3	10	anti-parallel
Strand 4	D	116	118	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	40	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	3	10	anti-parallel
Strand 4	E	116	118	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	40	first strand
Strand 2	F	72	80	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	116	118	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	40	first strand
Strand 2	G	72	80	anti-parallel
Strand 3	G	3	10	anti-parallel
Strand 4	G	116	118	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	40	first strand
Strand 2	H	72	80	anti-parallel
Strand 3	H	3	10	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	40	first strand
Strand 2	I	72	80	anti-parallel
Strand 3	I	3	10	anti-parallel
Strand 4	I	116	118	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	40	first strand
Strand 2	J	72	79	anti-parallel
Strand 3	J	4	10	anti-parallel
Strand 4	J	116	117	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	40	first strand
Strand 2	K	72	80	anti-parallel
Strand 3	K	3	10	anti-parallel
Strand 4	K	116	118	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	40	first strand
Strand 2	L	72	80	anti-parallel
Strand 3	L	3	10	anti-parallel
Strand 4	L	116	118	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	40	first strand
Strand 2	M	72	80	anti-parallel
Strand 3	M	3	10	anti-parallel
Strand 4	M	116	118	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	10	first strand
Strand 2	N	71	78	anti-parallel
Strand 3	N	33	41	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	40	first strand
Strand 2	O	72	80	anti-parallel
Strand 3	O	3	10	anti-parallel
Strand 4	O	116	117	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	33	40	first strand
Strand 2	P	72	80	anti-parallel
Strand 3	P	3	10	anti-parallel
Strand 4	P	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGV