Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGW entry

There are 8 chains in PDB entry 3VGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 123
B
 LYS 3LEU 123
C
 ALA 1LEU 123
D
 LYS 3LEU 123
E
 ALA 1LEU 123
F
 LYS 3LEU 123
G
 ALA 1LEU 123
H
 LYS 3LEU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3VGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
105 111Right-handed 310
Helix 3
3
B
55 59Right-handed 310
Helix 4
4
B
105 111Right-handed 310
Helix 5
5
C
55 59Right-handed 310
Helix 6
6
C
105 111Right-handed 310
Helix 7
7
D
55 59Right-handed 310
Helix 8
8
D
105 111Right-handed 310
Helix 9
9
E
55 59Right-handed 310
Helix 10
10
E
105 111Right-handed 310
Helix 11
11
F
55 59Right-handed 310
Helix 12
12
F
105 111Right-handed 310
Helix 13
13
G
55 59Right-handed 310
Helix 14
14
G
105 111Right-handed 310
Helix 15
15
H
55 59Right-handed 310
Helix 16
16
H
105 111Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3VGW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
17 20anti-parallel
Strand 3
A
28 34anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
63 69anti-parallel
Strand 6
A
76 85anti-parallel
Strand 7
A
91 100anti-parallel
Strand 8
A
113 122anti-parallel
Strand 9
A
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
17 20anti-parallel
Strand 3
B
28 34anti-parallel
Strand 4
B
47 53anti-parallel
Strand 5
B
63 69anti-parallel
Strand 6
B
76 85anti-parallel
Strand 7
B
91 100anti-parallel
Strand 8
B
113 122anti-parallel
Strand 9
B
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
17 20anti-parallel
Strand 3
C
28 34anti-parallel
Strand 4
C
47 53anti-parallel
Strand 5
C
63 69anti-parallel
Strand 6
C
76 85anti-parallel
Strand 7
C
91 100anti-parallel
Strand 8
C
113 123anti-parallel
Strand 9
C
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
17 20anti-parallel
Strand 3
D
28 34anti-parallel
Strand 4
D
47 53anti-parallel
Strand 5
D
63 69anti-parallel
Strand 6
D
76 85anti-parallel
Strand 7
D
91 100anti-parallel
Strand 8
D
113 122anti-parallel
Strand 9
D
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 12first strand
Strand 2
E
17 20anti-parallel
Strand 3
E
28 34anti-parallel
Strand 4
E
47 53anti-parallel
Strand 5
E
63 69anti-parallel
Strand 6
E
76 85anti-parallel
Strand 7
E
91 100anti-parallel
Strand 8
E
113 122anti-parallel
Strand 9
E
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
17 20anti-parallel
Strand 3
F
28 34anti-parallel
Strand 4
F
47 53anti-parallel
Strand 5
F
63 69anti-parallel
Strand 6
F
76 85anti-parallel
Strand 7
F
91 100anti-parallel
Strand 8
F
113 122anti-parallel
Strand 9
F
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
8 12first strand
Strand 2
G
17 20anti-parallel
Strand 3
G
28 34anti-parallel
Strand 4
G
47 53anti-parallel
Strand 5
G
63 69anti-parallel
Strand 6
G
76 85anti-parallel
Strand 7
G
91 100anti-parallel
Strand 8
G
113 122anti-parallel
Strand 9
G
8 12anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 12first strand
Strand 2
H
17 20anti-parallel
Strand 3
H
28 34anti-parallel
Strand 4
H
47 53anti-parallel
Strand 5
H
63 69anti-parallel
Strand 6
H
76 85anti-parallel
Strand 7
H
91 100anti-parallel
Strand 8
H
113 122anti-parallel
Strand 9
H
8 12anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il