Analysis of interatomic Contacts of Structural Units in PDB entry:
3VH0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VH0 entry

There are 6 chains in PDB entry 3VH0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	LEU 353
B	GLU 33	LEU 353
C	GLU 33	LEU 353
D	GLU 32	LEU 353
E	C 1	G 11
F	C 1	G 11

There are 12 helices in PDB entry 3VH0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	108	110	Right-handed 310
Helix 2	2	A	240	242	Right-handed 310
Helix 3	3	A	281	283	Right-handed 310
Helix 4	4	B	108	110	Right-handed 310
Helix 5	5	B	240	242	Right-handed 310
Helix 6	6	B	281	283	Right-handed 310
Helix 7	7	C	108	110	Right-handed 310
Helix 8	8	C	240	242	Right-handed 310
Helix 9	9	C	281	283	Right-handed 310
Helix 10	10	D	108	110	Right-handed 310
Helix 11	11	D	240	242	Right-handed 310
Helix 12	12	D	281	283	Right-handed 310

There are 28 sheets in PDB entry 3VH0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	327	333	anti-parallel
Strand 4	A	315	321	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	81	87	anti-parallel
Strand 5	C	66	67	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	C	81	87	parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	54	59	anti-parallel
Strand 5	C	43	49	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	122	128	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	149	first strand
Strand 2	A	154	160	anti-parallel
Strand 3	A	164	170	anti-parallel
Strand 4	A	175	184	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	198	202	anti-parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	244	247	anti-parallel
Strand 3	A	254	259	anti-parallel
Strand 4	A	265	270	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	285	290	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	306	311	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	346	352	anti-parallel
Strand 3	B	327	333	anti-parallel
Strand 4	B	315	321	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	49	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	81	87	anti-parallel
Strand 5	D	66	67	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	D	81	87	parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	43	49	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	123	128	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	149	first strand
Strand 2	B	154	160	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	220	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	244	247	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	265	270	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	285	290	anti-parallel
Strand 3	B	295	300	anti-parallel
Strand 4	B	306	311	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	40	first strand
Strand 2	C	346	352	anti-parallel
Strand 3	C	327	333	anti-parallel
Strand 4	C	315	321	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	102	107	anti-parallel
Strand 3	C	112	117	anti-parallel
Strand 4	C	123	128	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	149	first strand
Strand 2	C	154	160	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	217	220	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	239	first strand
Strand 2	C	244	247	anti-parallel
Strand 3	C	254	259	anti-parallel
Strand 4	C	265	270	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	285	290	anti-parallel
Strand 3	C	295	300	anti-parallel
Strand 4	C	306	311	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	40	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	327	333	anti-parallel
Strand 4	D	315	321	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	102	107	anti-parallel
Strand 3	D	112	117	anti-parallel
Strand 4	D	122	128	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	149	first strand
Strand 2	D	154	160	anti-parallel
Strand 3	D	164	170	anti-parallel
Strand 4	D	175	184	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	198	202	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	217	223	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	244	247	anti-parallel
Strand 3	D	254	259	anti-parallel
Strand 4	D	265	270	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	285	290	anti-parallel
Strand 3	D	295	300	anti-parallel
Strand 4	D	306	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VH0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VH0