Analysis of interatomic Contacts of Structural Units in PDB entry:
3VH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VH2 entry

There is 1 chain in PDB entry 3VH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3VH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
89 95Right-handed alpha
Helix 3
3
A
97 114Right-handed alpha
Helix 4
4
A
116 120Right-handed 310
Helix 5
5
A
161 175Right-handed alpha
Helix 6
6
A
193 201Right-handed alpha
Helix 7
7
A
218 230Right-handed alpha
Helix 8
8
A
288 293Right-handed alpha
Helix 9
9
A
293 314Right-handed alpha
Helix 10
10
A
318 324Right-handed alpha
Helix 11
11
A
333 345Right-handed alpha
Helix 12
12
A
371 375Right-handed 310
Helix 13
13
A
378 391Right-handed alpha
Helix 14
14
A
412 430Right-handed alpha
Helix 15
15
A
439 442Right-handed 310
Helix 16
16
A
443 453Right-handed alpha
Helix 17
17
A
512 529Right-handed alpha
Helix 18
18
A
573 583Right-handed alpha
Helix 19
19
A
584 594Right-handed alpha
Helix 20
20
A
594 603Right-handed alpha
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There are 6 sheets in PDB entry 3VH2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
248 254anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
202 206parallel
Strand 6
A
180 183anti-parallel
Strand 7
A
189 191anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
59 62parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 46first strand
Strand 2
A
78 87anti-parallel
Strand 3
A
123 130parallel
Strand 4
A
135 146anti-parallel
Strand 5
A
269 273anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 46first strand
Strand 2
A
78 87anti-parallel
Strand 3
A
123 130parallel
Strand 4
A
135 146anti-parallel
Strand 5
A
284 287anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
350 354parallel
Strand 3
A
326 330parallel
Strand 4
A
432 435parallel
Strand 5
A
456 462parallel
Strand 6
A
466 472anti-parallel
Strand 7
A
548 552anti-parallel
Strand 8
A
557 561anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 540first strand
Strand 2
A
543 544anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il