Analysis of interatomic Contacts of Structural Units in PDB entry:
3VHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VHL entry

There are 2 chains in PDB entry 3VHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1792ARG 2064
B
 MET 1GLU 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1802 1809Right-handed 310
Helix 2
2
A
1822 1839Right-handed alpha
Helix 3
3
A
1853 1857Right-handed 310
Helix 4
4
A
1874 1879Right-handed alpha
Helix 5
5
A
1909 1913Right-handed 310
Helix 6
6
A
1944 1966Right-handed alpha
Helix 7
7
A
1970 1983Right-handed alpha
Helix 8
8
A
1989 1998Right-handed alpha
Helix 9
9
A
2004 2036Right-handed alpha
Helix 10
10
A
2037 2039Right-handed 310
Helix 11
11
A
2040 2063Right-handed alpha
Helix 12
12
B
15 26Right-handed alpha
Helix 13
13
B
28 32Right-handed 310
Helix 14
14
B
61 65Right-handed 310
Helix 15
15
B
67 72Right-handed 310
Helix 16
16
B
86 96Right-handed alpha
Helix 17
17
B
96 105Right-handed alpha
Helix 18
18
B
116 121Right-handed alpha
Helix 19
19
B
122 132Right-handed alpha
Helix 20
20
B
138 150Right-handed alpha
Helix 21
21
B
164 177Right-handed alpha
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There are 2 sheets in PDB entry 3VHL. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1843 1846first strand
Strand 2
A
1862 1871parallel
Strand 3
A
1891 1900anti-parallel
Strand 4
A
1914 1926anti-parallel
Strand 5
A
1932 1943anti-parallel
Strand 6
A
1812 1817anti-parallel
Strand 7
A
1794 1801anti-parallel
Strand 8
A
1862 1871anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
4 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
153 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il