Analysis of interatomic Contacts of Structural Units in PDB entry:
3VI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VI1 entry

There are 4 chains in PDB entry 3VI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1VAL 470
B
 GLY 1VAL 470
C
 ARG 1GLN 6
D
 ARG 1GLN 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3VI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
72 75Right-handed 310
Helix 5
5
A
89 107Right-handed alpha
Helix 6
6
A
168 183Right-handed alpha
Helix 7
7
A
198 202Right-handed 310
Helix 8
8
A
218 223Right-handed 310
Helix 9
9
A
235 247Right-handed alpha
Helix 10
10
A
267 271Right-handed 310
Helix 11
11
A
380 385Right-handed 310
Helix 12
12
A
407 412Right-handed alpha
Helix 13
13
A
464 466Right-handed 310
Helix 14
14
B
3 14Right-handed alpha
Helix 15
15
B
31 40Right-handed alpha
Helix 16
16
B
66 71Right-handed alpha
Helix 17
17
B
72 75Right-handed 310
Helix 18
18
B
89 107Right-handed alpha
Helix 19
19
B
168 183Right-handed alpha
Helix 20
20
B
198 202Right-handed 310
Helix 21
21
B
218 223Right-handed 310
Helix 22
22
B
235 247Right-handed alpha
Helix 23
23
B
267 269Right-handed 310
Helix 24
24
B
380 385Right-handed 310
Helix 25
25
B
407 412Right-handed alpha
Helix 26
26
B
464 466Right-handed 310
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There are 9 sheets in PDB entry 3VI1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 116first strand
Strand 2
A
55 61parallel
Strand 3
A
122 127parallel
Strand 4
A
149 153parallel
Strand 5
A
135 137anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
291 293parallel
Strand 3
A
330 332parallel
Strand 4
A
348 350parallel
Strand 5
A
366 368parallel
Strand 6
A
390 392parallel
Strand 7
A
455 459parallel
Strand 8
A
441 446anti-parallel
Strand 9
A
429 433anti-parallel
Strand 10
A
418 419parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
320 322parallel
Strand 3
A
310 311anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
339 341parallel
Strand 3
A
357 359parallel
Strand 4
A
375 377parallel
Strand 5
A
401 403parallel
Strand 6
A
468 469parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 116first strand
Strand 2
B
55 61parallel
Strand 3
B
122 127parallel
Strand 4
B
149 153parallel
Strand 5
B
135 137anti-parallel
Strand 6
D
3 4anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
258 261parallel
Strand 3
B
291 293parallel
Strand 4
B
330 332parallel
Strand 5
B
348 350parallel
Strand 6
B
366 368parallel
Strand 7
B
390 392parallel
Strand 8
B
455 460parallel
Strand 9
B
440 446anti-parallel
Strand 10
B
429 434anti-parallel
Strand 11
B
418 419parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
320 322parallel
Strand 3
B
310 311anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
339 341parallel
Strand 3
B
357 359parallel
Strand 4
B
375 377parallel
Strand 5
B
401 403parallel
Strand 6
B
468 469parallel
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