Analysis of interatomic Contacts of Structural Units in PDB entry:
3VIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VIP entry

There is 1 chain in PDB entry 3VIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27ASP 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3VIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 47Right-handed alpha
Helix 2
2
A
58 67Right-handed alpha
Helix 3
3
A
68 75Right-handed 310
Helix 4
4
A
82 98Right-handed alpha
Helix 5
5
A
107 112Right-handed alpha
Helix 6
6
A
121 138Right-handed alpha
Helix 7
7
A
152 157Right-handed alpha
Helix 8
8
A
165 182Right-handed alpha
Helix 9
9
A
193 198Right-handed alpha
Helix 10
10
A
199 202Right-handed 310
Helix 11
11
A
216 240Right-handed alpha
Helix 12
12
A
240 245Right-handed alpha
Helix 13
13
A
263 278Right-handed alpha
Helix 14
14
A
278 287Right-handed alpha
Helix 15
15
A
293 307Right-handed alpha
Helix 16
16
A
318 326Right-handed alpha
Helix 17
17
A
352 358Right-handed alpha
Helix 18
18
A
378 394Right-handed alpha
Helix 19
19
A
413 433Right-handed alpha
Helix 20
20
A
451 455Right-handed 310
Helix 21
21
A
477 490Right-handed alpha
Helix 22
22
A
493 497Right-handed 310
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There are 3 sheets in PDB entry 3VIP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
101 105parallel
Strand 3
A
141 147parallel
Strand 4
A
187 192parallel
Strand 5
A
247 253parallel
Strand 6
A
331 335parallel
Strand 7
A
398 402parallel
Strand 8
A
438 444parallel
Strand 9
A
36 40parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
339 343parallel
Strand 3
A
360 362anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
474 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il