Analysis of interatomic Contacts of Structural Units in PDB entry:
3VIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VIS entry

There are 2 chains in PDB entry 3VIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 38PHE 300
B
 ALA 40PHE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3VIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 56Right-handed alpha
Helix 2
2
A
102 115Right-handed alpha
Helix 3
3
A
131 149Right-handed alpha
Helix 4
4
A
151 156Right-handed alpha
Helix 5
5
A
169 182Right-handed alpha
Helix 6
6
A
223 230Right-handed alpha
Helix 7
7
A
248 252Right-handed 310
Helix 8
8
A
254 270Right-handed alpha
Helix 9
9
A
272 274Right-handed 310
Helix 10
10
A
275 280Right-handed alpha
Helix 11
11
B
50 56Right-handed alpha
Helix 12
12
B
102 115Right-handed alpha
Helix 13
13
B
131 149Right-handed alpha
Helix 14
14
B
151 156Right-handed alpha
Helix 15
15
B
169 182Right-handed alpha
Helix 16
16
B
223 231Right-handed alpha
Helix 17
17
B
248 252Right-handed 310
Helix 18
18
B
254 270Right-handed alpha
Helix 19
19
B
272 274Right-handed 310
Helix 20
20
B
275 280Right-handed alpha
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There are 4 sheets in PDB entry 3VIS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
90 96parallel
Strand 5
A
158 168parallel
Strand 6
A
187 191parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
237 242parallel
Strand 3
A
291 296anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
119 123anti-parallel
Strand 4
B
90 96parallel
Strand 5
B
158 168parallel
Strand 6
B
187 191parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 212first strand
Strand 2
B
237 242parallel
Strand 3
B
291 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il