Analysis of interatomic Contacts of Structural Units in PDB entry:
3VIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VIU entry

There is 1 chain in PDB entry 3VIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3VIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
11 23Right-handed alpha
Helix 3
3
A
27 38Right-handed alpha
Helix 4
4
A
39 44Right-handed alpha
Helix 5
5
A
47 52Right-handed alpha
Helix 6
6
A
87 94Right-handed alpha
Helix 7
7
A
94 113Right-handed alpha
Helix 8
8
A
131 153Right-handed alpha
Helix 9
9
A
165 168Right-handed 310
Helix 10
10
A
184 186Right-handed 310
Helix 11
11
A
234 251Right-handed alpha
Helix 12
12
A
263 276Right-handed alpha
Helix 13
13
A
285 287Right-handed 310
Helix 14
14
A
295 302Right-handed alpha
Helix 15
15
A
316 327Right-handed alpha
Helix 16
16
A
357 362Right-handed alpha
Helix 17
17
A
373 381Right-handed alpha
Helix 18
18
A
390 400Right-handed alpha
Helix 19
19
A
407 412Right-handed alpha
Helix 20
20
A
450 457Right-handed alpha
Helix 21
21
A
457 476Right-handed alpha
Helix 22
22
A
494 516Right-handed alpha
Helix 23
23
A
577 585Right-handed alpha
Helix 24
24
A
595 612Right-handed alpha
Helix 25
25
A
624 635Right-handed alpha
Helix 26
26
A
649 654Right-handed alpha
Helix 27
27
A
666 668Right-handed 310
Helix 28
28
A
669 680Right-handed alpha
Helix 29
29
A
708 724Right-handed alpha
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There are 5 sheets in PDB entry 3VIU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
78 86anti-parallel
Strand 4
A
172 182anti-parallel
Strand 5
A
116 126anti-parallel
Strand 6
A
156 163parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
307 312anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
279 283anti-parallel
Strand 6
A
342 347parallel
Strand 7
A
350 356anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
441 448anti-parallel
Strand 4
A
538 548anti-parallel
Strand 5
A
479 488anti-parallel
Strand 6
A
519 525parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
533 534anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
661 665anti-parallel
Strand 3
A
563 567anti-parallel
Strand 4
A
684 690anti-parallel
Strand 5
A
641 644anti-parallel
Strand 6
A
694 699parallel
Strand 7
A
702 707anti-parallel
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