Analysis of interatomic Contacts of Structural Units in PDB entry:
3VIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VIV entry

There are 3 chains in PDB entry 3VIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19LEU 237
B
 LEU 19LEU 237
C
 ASN 234PRO 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 51Right-handed alpha
Helix 2
2
A
67 79Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
136 154Right-handed alpha
Helix 5
5
A
157 167Right-handed alpha
Helix 6
6
A
172 179Right-handed alpha
Helix 7
7
A
188 197Right-handed alpha
Helix 8
8
A
225 237Right-handed alpha
Helix 9
9
B
34 51Right-handed alpha
Helix 10
10
B
66 80Right-handed alpha
Helix 11
11
B
97 105Right-handed alpha
Helix 12
12
B
136 154Right-handed alpha
Helix 13
13
B
157 167Right-handed alpha
Helix 14
14
B
172 179Right-handed alpha
Helix 15
15
B
188 197Right-handed alpha
Helix 16
16
B
225 237Right-handed alpha
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There are 6 sheets in PDB entry 3VIV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
108 111parallel
Strand 3
A
84 88parallel
Strand 4
A
55 61parallel
Strand 5
A
23 30parallel
Strand 6
A
218 221parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
C
235 236parallel
Strand 3
A
122 126parallel
Strand 4
A
132 134anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
116 118parallel
Strand 3
A
170 171anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
108 111parallel
Strand 3
B
84 88parallel
Strand 4
B
55 61parallel
Strand 5
B
22 30parallel
Strand 6
B
217 222parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
116 118parallel
Strand 3
B
170 171anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
132 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il