Analysis of interatomic Contacts of Structural Units in PDB entry:
3VJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VJD entry

There is 1 chain in PDB entry 3VJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
30 55Right-handed alpha
Helix 4
4
A
57 73Right-handed alpha
Helix 5
5
A
83 95Right-handed alpha
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
122 134Right-handed alpha
Helix 8
8
A
134 146Right-handed alpha
Helix 9
9
A
150 172Right-handed alpha
Helix 10
10
A
172 179Right-handed alpha
Helix 11
11
A
185 193Right-handed alpha
Helix 12
12
A
195 203Right-handed alpha
Helix 13
13
A
205 229Right-handed alpha
Helix 14
14
A
230 233Right-handed 310
Helix 15
15
A
237 258Right-handed alpha
Helix 16
16
A
269 282Right-handed alpha
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There are no sheets in PDB entry 3VJD
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