Analysis of interatomic Contacts of Structural Units in PDB entry:
3VJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VJJ entry

There are 2 chains in PDB entry 3VJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 25ASP 367
B
 GLU 26ASP 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 83Right-handed alpha
Helix 2
2
A
85 89Right-handed 310
Helix 3
3
A
101 122Right-handed alpha
Helix 4
4
A
191 195Right-handed 310
Helix 5
5
A
203 230Right-handed alpha
Helix 6
6
A
235 239Right-handed 310
Helix 7
7
A
241 243Right-handed 310
Helix 8
8
A
244 261Right-handed alpha
Helix 9
9
A
268 277Right-handed alpha
Helix 10
10
A
281 289Right-handed alpha
Helix 11
11
A
296 306Right-handed alpha
Helix 12
12
B
72 83Right-handed alpha
Helix 13
13
B
85 89Right-handed 310
Helix 14
14
B
101 122Right-handed alpha
Helix 15
15
B
203 231Right-handed alpha
Helix 16
16
B
235 239Right-handed 310
Helix 17
17
B
241 243Right-handed 310
Helix 18
18
B
244 261Right-handed alpha
Helix 19
19
B
268 277Right-handed alpha
Helix 20
20
B
281 289Right-handed alpha
Helix 21
21
B
296 306Right-handed alpha
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There are 9 sheets in PDB entry 3VJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
70 71anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
340 342anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
188 189anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
184 185anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
334 336anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
70 71anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
340 342anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
188 189anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
325 328anti-parallel
Strand 3
B
334 336anti-parallel
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