Analysis of interatomic Contacts of Structural Units in PDB entry:
3VK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VK4 entry

There are 8 chains in PDB entry 3VK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7THR 210
A
 TYR 212ALA 398
B
 GLY 3THR 210
B
 TYR 212ALA 398
C
 LEU 7THR 210
C
 TYR 212ALA 398
D
 LEU 7THR 210
D
 TYR 212ALA 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 3VK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
20 25Right-handed 310
Helix 3
3
A
42 49Right-handed alpha
Helix 4
4
A
64 79Right-handed alpha
Helix 5
5
A
88 101Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
125 129Right-handed 310
Helix 8
8
A
139 147Right-handed alpha
Helix 9
9
A
168 178Right-handed alpha
Helix 10
10
A
190 195Right-handed alpha
Helix 11
11
A
227 237Right-handed alpha
Helix 12
12
A
237 243Right-handed alpha
Helix 13
13
A
248 260Right-handed alpha
Helix 14
14
A
261 281Right-handed alpha
Helix 15
15
A
299 307Right-handed alpha
Helix 16
16
A
320 332Right-handed alpha
Helix 17
17
A
350 354Right-handed 310
Helix 18
18
A
360 367Right-handed alpha
Helix 19
19
A
382 398Right-handed alpha
Helix 20
20
B
9 17Right-handed alpha
Helix 21
21
B
20 24Right-handed 310
Helix 22
22
B
44 49Right-handed alpha
Helix 23
23
B
64 79Right-handed alpha
Helix 24
24
B
88 101Right-handed alpha
Helix 25
25
B
114 124Right-handed alpha
Helix 26
26
B
125 129Right-handed 310
Helix 27
27
B
139 147Right-handed alpha
Helix 28
28
B
168 180Right-handed alpha
Helix 29
29
B
190 195Right-handed alpha
Helix 30
30
B
196 201Right-handed 310
Helix 31
31
B
227 237Right-handed alpha
Helix 32
32
B
237 243Right-handed alpha
Helix 33
33
B
248 260Right-handed alpha
Helix 34
34
B
261 281Right-handed alpha
Helix 35
35
B
299 307Right-handed alpha
Helix 36
36
B
323 332Right-handed alpha
Helix 37
37
B
350 354Right-handed 310
Helix 38
38
B
360 366Right-handed alpha
Helix 39
39
B
382 397Right-handed alpha
Helix 40
40
C
9 17Right-handed alpha
Helix 41
41
C
20 24Right-handed 310
Helix 42
42
C
42 48Right-handed alpha
Helix 43
43
C
64 79Right-handed alpha
Helix 44
44
C
88 101Right-handed alpha
Helix 45
45
C
114 124Right-handed alpha
Helix 46
46
C
125 129Right-handed 310
Helix 47
47
C
139 145Right-handed alpha
Helix 48
48
C
168 180Right-handed alpha
Helix 49
49
C
190 195Right-handed alpha
Helix 50
50
C
196 201Right-handed 310
Helix 51
51
C
227 237Right-handed alpha
Helix 52
52
C
248 260Right-handed alpha
Helix 53
53
C
261 282Right-handed alpha
Helix 54
54
C
299 307Right-handed alpha
Helix 55
55
C
320 332Right-handed alpha
Helix 56
56
C
350 354Right-handed 310
Helix 57
57
C
360 367Right-handed alpha
Helix 58
58
C
382 398Right-handed alpha
Helix 59
59
D
9 17Right-handed alpha
Helix 60
60
D
20 24Right-handed 310
Helix 61
61
D
42 49Right-handed alpha
Helix 62
62
D
64 78Right-handed alpha
Helix 63
63
D
88 101Right-handed alpha
Helix 64
64
D
114 123Right-handed alpha
Helix 65
65
D
124 129Right-handed 310
Helix 66
66
D
139 145Right-handed alpha
Helix 67
67
D
168 180Right-handed alpha
Helix 68
68
D
227 237Right-handed alpha
Helix 69
69
D
237 243Right-handed alpha
Helix 70
70
D
248 260Right-handed alpha
Helix 71
71
D
261 282Right-handed alpha
Helix 72
72
D
299 307Right-handed alpha
Helix 73
73
D
321 332Right-handed alpha
Helix 74
74
D
350 354Right-handed 310
Helix 75
75
D
360 367Right-handed alpha
Helix 76
76
D
382 398Right-handed alpha
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There are 8 sheets in PDB entry 3VK4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
222 226anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
151 157parallel
Strand 6
A
106 110parallel
Strand 7
A
131 135parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
373 377anti-parallel
Strand 4
A
347 349anti-parallel
Strand 5
A
336 337parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
222 226anti-parallel
Strand 3
B
204 208anti-parallel
Strand 4
B
182 186parallel
Strand 5
B
151 157parallel
Strand 6
B
106 109parallel
Strand 7
B
131 134parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 290first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
373 377anti-parallel
Strand 4
B
347 349anti-parallel
Strand 5
B
336 337parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
222 226anti-parallel
Strand 3
C
204 208anti-parallel
Strand 4
C
182 186parallel
Strand 5
C
151 157parallel
Strand 6
C
106 110parallel
Strand 7
C
131 135parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 290first strand
Strand 2
C
313 318anti-parallel
Strand 3
C
373 377anti-parallel
Strand 4
C
347 349anti-parallel
Strand 5
C
336 337parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 86first strand
Strand 2
D
222 226anti-parallel
Strand 3
D
204 208anti-parallel
Strand 4
D
182 186parallel
Strand 5
D
151 157parallel
Strand 6
D
106 109parallel
Strand 7
D
131 134parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
286 290first strand
Strand 2
D
313 318anti-parallel
Strand 3
D
373 377anti-parallel
Strand 4
D
347 349anti-parallel
Strand 5
D
336 337parallel
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