Analysis of interatomic Contacts of Structural Units in PDB entry:
3VK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VK5 entry

There are 2 chains in PDB entry 3VK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 16GLY 268
B
 PRO 17GLY 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3VK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 32Right-handed alpha
Helix 2
2
A
46 60Right-handed alpha
Helix 3
3
A
74 90Right-handed alpha
Helix 4
4
A
125 130Right-handed alpha
Helix 5
5
A
130 140Right-handed alpha
Helix 6
6
A
145 149Right-handed 310
Helix 7
7
A
163 171Right-handed alpha
Helix 8
8
A
180 193Right-handed alpha
Helix 9
9
A
208 219Right-handed alpha
Helix 10
10
A
233 243Right-handed alpha
Helix 11
11
A
251 255Right-handed 310
Helix 12
12
A
258 268Right-handed alpha
Helix 13
13
B
23 32Right-handed alpha
Helix 14
14
B
46 61Right-handed alpha
Helix 15
15
B
74 90Right-handed alpha
Helix 16
16
B
125 130Right-handed alpha
Helix 17
17
B
130 140Right-handed alpha
Helix 18
18
B
145 149Right-handed 310
Helix 19
19
B
163 171Right-handed alpha
Helix 20
20
B
180 193Right-handed alpha
Helix 21
21
B
208 219Right-handed alpha
Helix 22
22
B
233 243Right-handed alpha
Helix 23
23
B
251 255Right-handed 310
Helix 24
24
B
258 268Right-handed alpha
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There are 2 sheets in PDB entry 3VK5. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
65 68parallel
Strand 3
A
94 97parallel
Strand 4
A
114 120parallel
Strand 5
A
151 159parallel
Strand 6
A
197 201parallel
Strand 7
A
224 228parallel
Strand 8
A
247 250parallel
Strand 9
A
35 40parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
65 68parallel
Strand 3
B
94 97parallel
Strand 4
B
114 119parallel
Strand 5
B
151 159parallel
Strand 6
B
197 201parallel
Strand 7
B
224 228parallel
Strand 8
B
247 250parallel
Strand 9
B
35 40parallel
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