Analysis of interatomic Contacts of Structural Units in PDB entry:
3VKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VKW entry

There is 1 chain in PDB entry 3VKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 672VAL 1111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
675 680Right-handed alpha
Helix 2
2
A
683 688Right-handed 310
Helix 3
3
A
700 730Right-handed alpha
Helix 4
4
A
799 801Right-handed 310
Helix 5
5
A
803 814Right-handed alpha
Helix 6
6
A
838 847Right-handed alpha
Helix 7
7
A
858 870Right-handed alpha
Helix 8
8
A
885 891Right-handed alpha
Helix 9
9
A
907 911Right-handed 310
Helix 10
10
A
912 923Right-handed alpha
Helix 11
11
A
949 954Right-handed alpha
Helix 12
12
A
970 979Right-handed alpha
Helix 13
13
A
1002 1006Right-handed 310
Helix 14
14
A
1021 1030Right-handed alpha
Helix 15
15
A
1040 1043Right-handed 310
Helix 16
16
A
1067 1075Right-handed alpha
Helix 17
17
A
1089 1101Right-handed alpha
Helix 18
18
A
1102 1108Right-handed alpha
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There are 4 sheets in PDB entry 3VKW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 754first strand
Strand 2
A
742 746anti-parallel
Strand 3
A
791 797anti-parallel
Strand 4
A
763 768anti-parallel
Strand 5
A
773 777anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 884first strand
Strand 2
A
853 856parallel
Strand 3
A
902 905parallel
Strand 4
A
927 932parallel
Strand 5
A
827 833parallel
Strand 6
A
959 963parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
965 966first strand
Strand 2
A
986 987parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 999first strand
Strand 2
A
1077 1085parallel
Strand 3
A
1047 1054parallel
Strand 4
A
1016 1019parallel
Strand 5
A
1037 1038parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il