Analysis of interatomic Contacts of Structural Units in PDB entry:
3VL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VL8 entry

There is 1 chain in PDB entry 3VL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLU 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3VL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
80 82Right-handed 310
Helix 3
3
A
178 189Right-handed alpha
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There are 3 sheets in PDB entry 3VL8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
196 221anti-parallel
Strand 5
A
86 109anti-parallel
Strand 6
A
116 127anti-parallel
Strand 7
A
160 167parallel
Strand 8
A
148 157anti-parallel
Strand 9
A
144 145anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
196 221anti-parallel
Strand 3
A
48 58anti-parallel
Strand 4
A
34 45anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 45first strand
Strand 2
A
48 58anti-parallel
Strand 3
A
196 221anti-parallel
Strand 4
A
86 109anti-parallel
Strand 5
A
173 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il