Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLC entry

There are 2 chains in PDB entry 3VLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 351
E
 ASN 36LEU 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3VLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
30 45Right-handed alpha
Helix 3
3
A
60 67Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
127 133Right-handed alpha
Helix 6
6
A
135 156Right-handed alpha
Helix 7
7
A
175 177Right-handed 310
Helix 8
8
A
178 185Right-handed alpha
Helix 9
9
A
218 231Right-handed alpha
Helix 10
10
A
245 263Right-handed alpha
Helix 11
11
A
276 280Right-handed 310
Helix 12
12
A
290 306Right-handed alpha
Helix 13
13
A
322 332Right-handed alpha
Helix 14
14
A
333 335Right-handed 310
Helix 15
15
A
341 349Right-handed 310
Helix 16
16
E
39 57Right-handed alpha
Helix 17
17
E
64 82Right-handed alpha
Helix 18
18
E
84 89Right-handed alpha
Helix 19
19
E
92 97Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3VLC.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
51 55parallel
Strand 4
A
162 166parallel
Strand 5
A
20 24parallel
Strand 6
A
236 243parallel
Strand 7
A
266 274parallel
Strand 8
A
310 315parallel
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