Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLH entry

There are 2 chains in PDB entry 3VLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 18GLU 731
B
LYS 18GLU 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 3VLH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
60 73Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
86 99Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
119 127Right-handed 310
Helix 9
9
A
128 136Right-handed alpha
Helix 10
10
A
136 144Right-handed alpha
Helix 11
11
A
145 147Right-handed 310
Helix 12
12
A
148 164Right-handed alpha
Helix 13
13
A
223 227Right-handed 310
Helix 14
14
A
229 243Right-handed alpha
Helix 15
15
A
247 259Right-handed alpha
Helix 16
16
A
269 274Right-handed alpha
Helix 17
17
A
277 281Right-handed 310
Helix 18
18
A
282 286Right-handed 310
Helix 19
19
A
320 329Right-handed alpha
Helix 20
20
A
369 378Right-handed alpha
Helix 21
21
A
378 391Right-handed alpha
Helix 22
22
A
391 409Right-handed alpha
Helix 23
23
A
413 417Right-handed 310
Helix 24
24
A
427 431Right-handed 310
Helix 25
25
A
442 456Right-handed alpha
Helix 26
26
A
459 472Right-handed alpha
Helix 27
27
A
486 490Right-handed 310
Helix 28
28
A
492 499Right-handed 310
Helix 29
29
A
500 522Right-handed alpha
Helix 30
30
A
529 549Right-handed alpha
Helix 31
31
A
565 569Right-handed 310
Helix 32
32
A
570 575Right-handed alpha
Helix 33
33
A
576 578Right-handed 310
Helix 34
34
A
595 607Right-handed alpha
Helix 35
35
A
610 625Right-handed alpha
Helix 36
36
A
627 631Right-handed 310
Helix 37
37
A
645 653Right-handed alpha
Helix 38
38
A
684 688Right-handed alpha
Helix 39
39
A
689 691Right-handed 310
Helix 40
40
A
692 703Right-handed alpha
Helix 41
41
A
707 724Right-handed alpha
Helix 42
42
B
22 27Right-handed alpha
Helix 43
43
B
33 38Right-handed alpha
Helix 44
44
B
51 58Right-handed alpha
Helix 45
45
B
60 73Right-handed alpha
Helix 46
46
B
81 85Right-handed 310
Helix 47
47
B
86 100Right-handed alpha
Helix 48
48
B
113 117Right-handed 310
Helix 49
49
B
119 127Right-handed 310
Helix 50
50
B
128 136Right-handed alpha
Helix 51
51
B
136 144Right-handed alpha
Helix 52
52
B
145 147Right-handed 310
Helix 53
53
B
148 164Right-handed alpha
Helix 54
54
B
223 227Right-handed 310
Helix 55
55
B
229 243Right-handed alpha
Helix 56
56
B
247 259Right-handed alpha
Helix 57
57
B
269 274Right-handed alpha
Helix 58
58
B
277 281Right-handed 310
Helix 59
59
B
282 286Right-handed 310
Helix 60
60
B
298 302Right-handed 310
Helix 61
61
B
320 329Right-handed alpha
Helix 62
62
B
369 378Right-handed alpha
Helix 63
63
B
378 391Right-handed alpha
Helix 64
64
B
391 409Right-handed alpha
Helix 65
65
B
413 417Right-handed 310
Helix 66
66
B
427 431Right-handed 310
Helix 67
67
B
442 455Right-handed alpha
Helix 68
68
B
459 472Right-handed alpha
Helix 69
69
B
486 490Right-handed 310
Helix 70
70
B
492 499Right-handed 310
Helix 71
71
B
500 522Right-handed alpha
Helix 72
72
B
529 549Right-handed alpha
Helix 73
73
B
565 569Right-handed 310
Helix 74
74
B
570 575Right-handed alpha
Helix 75
75
B
576 578Right-handed 310
Helix 76
76
B
595 607Right-handed alpha
Helix 77
77
B
610 625Right-handed alpha
Helix 78
78
B
627 631Right-handed 310
Helix 79
79
B
645 652Right-handed alpha
Helix 80
80
B
683 688Right-handed alpha
Helix 81
81
B
689 691Right-handed 310
Helix 82
82
B
692 703Right-handed alpha
Helix 83
83
B
707 724Right-handed alpha
Helix 84
84
B
727 731Right-handed 310
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There are 10 sheets in PDB entry 3VLH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
263 264first strand
Strand 2
A
309 310anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 335first strand
Strand 2
A
341 345anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 355first strand
Strand 2
A
363 364anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
581 582first strand
Strand 2
A
587 588anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
656 660first strand
Strand 2
A
667 672anti-parallel
Strand 3
A
678 683anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
263 264first strand
Strand 2
B
309 310anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
331 335first strand
Strand 2
B
341 345anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 355first strand
Strand 2
B
363 364anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
581 582first strand
Strand 2
B
587 588anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
656 660first strand
Strand 2
B
668 672anti-parallel
Strand 3
B
678 682anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il