Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLI entry

There are 2 chains in PDB entry 3VLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18GLU 731
B
 LYS 18GLU 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 3VLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
60 73Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
86 99Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
119 127Right-handed 310
Helix 9
9
A
128 136Right-handed alpha
Helix 10
10
A
136 144Right-handed alpha
Helix 11
11
A
145 147Right-handed 310
Helix 12
12
A
148 164Right-handed alpha
Helix 13
13
A
223 227Right-handed 310
Helix 14
14
A
229 243Right-handed alpha
Helix 15
15
A
247 259Right-handed alpha
Helix 16
16
A
269 274Right-handed alpha
Helix 17
17
A
277 281Right-handed 310
Helix 18
18
A
282 286Right-handed 310
Helix 19
19
A
320 329Right-handed alpha
Helix 20
20
A
347 351Right-handed 310
Helix 21
21
A
369 378Right-handed alpha
Helix 22
22
A
378 391Right-handed alpha
Helix 23
23
A
391 409Right-handed alpha
Helix 24
24
A
413 417Right-handed 310
Helix 25
25
A
427 431Right-handed 310
Helix 26
26
A
442 456Right-handed alpha
Helix 27
27
A
459 472Right-handed alpha
Helix 28
28
A
486 490Right-handed 310
Helix 29
29
A
492 499Right-handed 310
Helix 30
30
A
500 522Right-handed alpha
Helix 31
31
A
529 549Right-handed alpha
Helix 32
32
A
565 569Right-handed 310
Helix 33
33
A
570 575Right-handed alpha
Helix 34
34
A
576 578Right-handed 310
Helix 35
35
A
595 607Right-handed alpha
Helix 36
36
A
610 625Right-handed alpha
Helix 37
37
A
627 631Right-handed 310
Helix 38
38
A
645 653Right-handed alpha
Helix 39
39
A
683 688Right-handed alpha
Helix 40
40
A
689 691Right-handed 310
Helix 41
41
A
692 703Right-handed alpha
Helix 42
42
A
707 724Right-handed alpha
Helix 43
43
B
22 27Right-handed alpha
Helix 44
44
B
33 38Right-handed alpha
Helix 45
45
B
39 41Right-handed 310
Helix 46
46
B
51 57Right-handed alpha
Helix 47
47
B
60 73Right-handed alpha
Helix 48
48
B
81 85Right-handed 310
Helix 49
49
B
86 100Right-handed alpha
Helix 50
50
B
113 117Right-handed 310
Helix 51
51
B
119 127Right-handed 310
Helix 52
52
B
128 136Right-handed alpha
Helix 53
53
B
136 144Right-handed alpha
Helix 54
54
B
145 147Right-handed 310
Helix 55
55
B
148 164Right-handed alpha
Helix 56
56
B
223 227Right-handed 310
Helix 57
57
B
229 243Right-handed alpha
Helix 58
58
B
247 259Right-handed alpha
Helix 59
59
B
269 274Right-handed alpha
Helix 60
60
B
277 281Right-handed 310
Helix 61
61
B
282 286Right-handed 310
Helix 62
62
B
298 302Right-handed 310
Helix 63
63
B
320 328Right-handed alpha
Helix 64
64
B
369 378Right-handed alpha
Helix 65
65
B
378 391Right-handed alpha
Helix 66
66
B
391 409Right-handed alpha
Helix 67
67
B
413 417Right-handed 310
Helix 68
68
B
427 431Right-handed 310
Helix 69
69
B
442 455Right-handed alpha
Helix 70
70
B
459 472Right-handed alpha
Helix 71
71
B
486 490Right-handed 310
Helix 72
72
B
492 499Right-handed 310
Helix 73
73
B
500 521Right-handed alpha
Helix 74
74
B
529 549Right-handed alpha
Helix 75
75
B
565 569Right-handed 310
Helix 76
76
B
570 578Right-handed 310
Helix 77
77
B
595 607Right-handed alpha
Helix 78
78
B
610 625Right-handed alpha
Helix 79
79
B
627 631Right-handed 310
Helix 80
80
B
645 653Right-handed alpha
Helix 81
81
B
683 688Right-handed alpha
Helix 82
82
B
689 691Right-handed 310
Helix 83
83
B
692 703Right-handed alpha
Helix 84
84
B
707 724Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3VLI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
341 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
359 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
587 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 660first strand
Strand 2
A
668 672anti-parallel
Strand 3
A
678 682anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 335first strand
Strand 2
B
341 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 582first strand
Strand 2
B
587 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 660first strand
Strand 2
B
668 672anti-parallel
Strand 3
B
678 682anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il