Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLK entry

There are 2 chains in PDB entry 3VLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18GLU 731
B
 LYS 18GLU 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 3VLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
33 41Right-handed alpha
Helix 3
3
A
51 57Right-handed alpha
Helix 4
4
A
60 73Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
86 99Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
119 127Right-handed 310
Helix 9
9
A
128 144Right-handed alpha
Helix 10
10
A
145 147Right-handed 310
Helix 11
11
A
148 164Right-handed alpha
Helix 12
12
A
223 227Right-handed 310
Helix 13
13
A
229 243Right-handed alpha
Helix 14
14
A
247 259Right-handed alpha
Helix 15
15
A
269 273Right-handed 310
Helix 16
16
A
277 281Right-handed 310
Helix 17
17
A
282 286Right-handed 310
Helix 18
18
A
320 329Right-handed alpha
Helix 19
19
A
369 378Right-handed alpha
Helix 20
20
A
378 391Right-handed alpha
Helix 21
21
A
391 409Right-handed alpha
Helix 22
22
A
413 417Right-handed 310
Helix 23
23
A
427 431Right-handed 310
Helix 24
24
A
442 456Right-handed alpha
Helix 25
25
A
459 472Right-handed alpha
Helix 26
26
A
486 490Right-handed 310
Helix 27
27
A
492 499Right-handed 310
Helix 28
28
A
500 521Right-handed alpha
Helix 29
29
A
529 548Right-handed alpha
Helix 30
30
A
565 569Right-handed 310
Helix 31
31
A
570 578Right-handed 310
Helix 32
32
A
595 607Right-handed alpha
Helix 33
33
A
610 625Right-handed alpha
Helix 34
34
A
627 631Right-handed 310
Helix 35
35
A
645 653Right-handed alpha
Helix 36
36
A
684 692Right-handed alpha
Helix 37
37
A
692 703Right-handed alpha
Helix 38
38
A
707 724Right-handed alpha
Helix 39
39
B
22 27Right-handed alpha
Helix 40
40
B
33 38Right-handed alpha
Helix 41
41
B
39 41Right-handed 310
Helix 42
42
B
51 57Right-handed alpha
Helix 43
43
B
60 73Right-handed alpha
Helix 44
44
B
81 85Right-handed 310
Helix 45
45
B
86 100Right-handed alpha
Helix 46
46
B
113 117Right-handed 310
Helix 47
47
B
119 127Right-handed 310
Helix 48
48
B
128 136Right-handed alpha
Helix 49
49
B
136 144Right-handed alpha
Helix 50
50
B
145 147Right-handed 310
Helix 51
51
B
148 164Right-handed alpha
Helix 52
52
B
223 227Right-handed 310
Helix 53
53
B
229 243Right-handed alpha
Helix 54
54
B
247 259Right-handed alpha
Helix 55
55
B
269 274Right-handed alpha
Helix 56
56
B
277 281Right-handed 310
Helix 57
57
B
282 286Right-handed 310
Helix 58
58
B
298 302Right-handed 310
Helix 59
59
B
320 329Right-handed alpha
Helix 60
60
B
369 378Right-handed alpha
Helix 61
61
B
378 391Right-handed alpha
Helix 62
62
B
391 409Right-handed alpha
Helix 63
63
B
413 417Right-handed 310
Helix 64
64
B
427 431Right-handed 310
Helix 65
65
B
442 456Right-handed alpha
Helix 66
66
B
459 472Right-handed alpha
Helix 67
67
B
486 490Right-handed 310
Helix 68
68
B
492 499Right-handed 310
Helix 69
69
B
500 522Right-handed alpha
Helix 70
70
B
529 549Right-handed alpha
Helix 71
71
B
565 569Right-handed 310
Helix 72
72
B
570 578Right-handed 310
Helix 73
73
B
595 607Right-handed alpha
Helix 74
74
B
610 625Right-handed alpha
Helix 75
75
B
627 631Right-handed 310
Helix 76
76
B
645 653Right-handed alpha
Helix 77
77
B
683 688Right-handed alpha
Helix 78
78
B
689 691Right-handed 310
Helix 79
79
B
692 703Right-handed alpha
Helix 80
80
B
707 724Right-handed alpha
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There are 10 sheets in PDB entry 3VLK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
309 310anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
341 345anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
363 364anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
587 588anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 660first strand
Strand 2
A
667 672anti-parallel
Strand 3
A
678 683anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
309 310anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 335first strand
Strand 2
B
341 345anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
363 364anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 582first strand
Strand 2
B
587 588anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 660first strand
Strand 2
B
668 672anti-parallel
Strand 3
B
678 682anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il