Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VLL entry

There are 2 chains in PDB entry 3VLL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 18	GLU 731
B	LYS 18	GLU 731

There are 77 helices in PDB entry 3VLL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	33	38	Right-handed alpha
Helix 2	2	A	39	41	Right-handed 310
Helix 3	3	A	51	57	Right-handed alpha
Helix 4	4	A	60	73	Right-handed alpha
Helix 5	5	A	81	85	Right-handed 310
Helix 6	6	A	86	100	Right-handed alpha
Helix 7	7	A	113	117	Right-handed 310
Helix 8	8	A	119	127	Right-handed 310
Helix 9	9	A	128	136	Right-handed alpha
Helix 10	10	A	136	144	Right-handed alpha
Helix 11	11	A	145	147	Right-handed 310
Helix 12	12	A	148	164	Right-handed alpha
Helix 13	13	A	223	227	Right-handed 310
Helix 14	14	A	229	243	Right-handed alpha
Helix 15	15	A	247	259	Right-handed alpha
Helix 16	16	A	269	273	Right-handed 310
Helix 17	17	A	277	281	Right-handed 310
Helix 18	18	A	282	286	Right-handed 310
Helix 19	19	A	320	329	Right-handed alpha
Helix 20	20	A	369	378	Right-handed alpha
Helix 21	21	A	378	391	Right-handed alpha
Helix 22	22	A	391	409	Right-handed alpha
Helix 23	23	A	413	417	Right-handed 310
Helix 24	24	A	427	431	Right-handed 310
Helix 25	25	A	442	456	Right-handed alpha
Helix 26	26	A	459	472	Right-handed alpha
Helix 27	27	A	486	490	Right-handed 310
Helix 28	28	A	492	499	Right-handed 310
Helix 29	29	A	500	522	Right-handed alpha
Helix 30	30	A	529	549	Right-handed alpha
Helix 31	31	A	565	569	Right-handed 310
Helix 32	32	A	570	578	Right-handed 310
Helix 33	33	A	595	607	Right-handed alpha
Helix 34	34	A	610	625	Right-handed alpha
Helix 35	35	A	627	631	Right-handed 310
Helix 36	36	A	645	653	Right-handed alpha
Helix 37	37	A	683	692	Right-handed alpha
Helix 38	38	A	692	703	Right-handed alpha
Helix 39	39	A	707	724	Right-handed alpha
Helix 40	40	B	33	38	Right-handed alpha
Helix 41	41	B	51	57	Right-handed alpha
Helix 42	42	B	60	73	Right-handed alpha
Helix 43	43	B	81	85	Right-handed 310
Helix 44	44	B	86	99	Right-handed alpha
Helix 45	45	B	109	117	Right-handed 310
Helix 46	46	B	119	127	Right-handed 310
Helix 47	47	B	128	136	Right-handed alpha
Helix 48	48	B	136	144	Right-handed alpha
Helix 49	49	B	145	147	Right-handed 310
Helix 50	50	B	148	164	Right-handed alpha
Helix 51	51	B	223	227	Right-handed 310
Helix 52	52	B	229	243	Right-handed alpha
Helix 53	53	B	247	259	Right-handed alpha
Helix 54	54	B	277	281	Right-handed 310
Helix 55	55	B	282	286	Right-handed 310
Helix 56	56	B	320	328	Right-handed alpha
Helix 57	57	B	369	378	Right-handed alpha
Helix 58	58	B	378	391	Right-handed alpha
Helix 59	59	B	391	409	Right-handed alpha
Helix 60	60	B	413	417	Right-handed 310
Helix 61	61	B	427	431	Right-handed 310
Helix 62	62	B	442	455	Right-handed alpha
Helix 63	63	B	459	472	Right-handed alpha
Helix 64	64	B	486	490	Right-handed 310
Helix 65	65	B	492	499	Right-handed 310
Helix 66	66	B	500	520	Right-handed alpha
Helix 67	67	B	529	549	Right-handed alpha
Helix 68	68	B	565	569	Right-handed 310
Helix 69	69	B	570	575	Right-handed alpha
Helix 70	70	B	576	578	Right-handed 310
Helix 71	71	B	595	607	Right-handed alpha
Helix 72	72	B	610	625	Right-handed alpha
Helix 73	73	B	627	631	Right-handed 310
Helix 74	74	B	645	652	Right-handed alpha
Helix 75	75	B	684	692	Right-handed alpha
Helix 76	76	B	692	703	Right-handed alpha
Helix 77	77	B	707	724	Right-handed alpha

There are 10 sheets in PDB entry 3VLL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	309	310	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	341	345	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	363	364	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	A	587	588	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	668	670	anti-parallel
Strand 3	A	681	682	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	309	310	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	335	first strand
Strand 2	B	341	345	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	582	first strand
Strand 2	B	587	588	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	660	first strand
Strand 2	B	667	672	anti-parallel
Strand 3	B	681	683	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VLL

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLL