Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLM entry

There are 2 chains in PDB entry 3VLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29PHE 728
B
 SER 29PHE 728
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 3VLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 38Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
119 127Right-handed 310
Helix 7
7
A
128 135Right-handed alpha
Helix 8
8
A
136 144Right-handed alpha
Helix 9
9
A
145 147Right-handed 310
Helix 10
10
A
148 163Right-handed alpha
Helix 11
11
A
223 227Right-handed 310
Helix 12
12
A
229 243Right-handed alpha
Helix 13
13
A
247 259Right-handed alpha
Helix 14
14
A
277 281Right-handed 310
Helix 15
15
A
282 286Right-handed 310
Helix 16
16
A
320 328Right-handed alpha
Helix 17
17
A
369 378Right-handed alpha
Helix 18
18
A
378 391Right-handed alpha
Helix 19
19
A
391 407Right-handed alpha
Helix 20
20
A
413 417Right-handed 310
Helix 21
21
A
427 431Right-handed 310
Helix 22
22
A
442 456Right-handed alpha
Helix 23
23
A
459 472Right-handed alpha
Helix 24
24
A
486 490Right-handed 310
Helix 25
25
A
492 499Right-handed 310
Helix 26
26
A
500 521Right-handed alpha
Helix 27
27
A
529 549Right-handed alpha
Helix 28
28
A
565 569Right-handed 310
Helix 29
29
A
570 578Right-handed 310
Helix 30
30
A
595 607Right-handed alpha
Helix 31
31
A
610 625Right-handed alpha
Helix 32
32
A
627 631Right-handed 310
Helix 33
33
A
645 653Right-handed alpha
Helix 34
34
A
683 689Right-handed alpha
Helix 35
35
A
692 704Right-handed alpha
Helix 36
36
A
707 725Right-handed alpha
Helix 37
37
B
33 38Right-handed alpha
Helix 38
38
B
39 41Right-handed 310
Helix 39
39
B
52 57Right-handed alpha
Helix 40
40
B
60 72Right-handed alpha
Helix 41
41
B
81 85Right-handed 310
Helix 42
42
B
86 100Right-handed alpha
Helix 43
43
B
113 117Right-handed 310
Helix 44
44
B
119 127Right-handed 310
Helix 45
45
B
128 135Right-handed alpha
Helix 46
46
B
136 144Right-handed alpha
Helix 47
47
B
145 147Right-handed 310
Helix 48
48
B
148 163Right-handed alpha
Helix 49
49
B
223 227Right-handed 310
Helix 50
50
B
229 243Right-handed alpha
Helix 51
51
B
247 260Right-handed alpha
Helix 52
52
B
269 274Right-handed alpha
Helix 53
53
B
277 281Right-handed 310
Helix 54
54
B
282 286Right-handed 310
Helix 55
55
B
320 329Right-handed alpha
Helix 56
56
B
369 378Right-handed alpha
Helix 57
57
B
378 391Right-handed alpha
Helix 58
58
B
391 407Right-handed alpha
Helix 59
59
B
413 417Right-handed 310
Helix 60
60
B
427 431Right-handed 310
Helix 61
61
B
442 455Right-handed alpha
Helix 62
62
B
459 472Right-handed alpha
Helix 63
63
B
486 490Right-handed 310
Helix 64
64
B
496 499Right-handed 310
Helix 65
65
B
500 521Right-handed alpha
Helix 66
66
B
529 548Right-handed alpha
Helix 67
67
B
570 575Right-handed alpha
Helix 68
68
B
576 578Right-handed 310
Helix 69
69
B
583 586Right-handed 310
Helix 70
70
B
595 607Right-handed alpha
Helix 71
71
B
610 625Right-handed alpha
Helix 72
72
B
627 631Right-handed 310
Helix 73
73
B
645 653Right-handed alpha
Helix 74
74
B
683 689Right-handed alpha
Helix 75
75
B
692 704Right-handed alpha
Helix 76
76
B
707 724Right-handed alpha
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There are 9 sheets in PDB entry 3VLM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
309 310anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
341 345anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
363 364anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 660first strand
Strand 2
A
668 672anti-parallel
Strand 3
A
678 682anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
309 310anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 335first strand
Strand 2
B
341 345anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
363 364anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 582first strand
Strand 2
B
587 588anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 660first strand
Strand 2
B
668 672anti-parallel
Strand 3
B
678 682anti-parallel
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