Analysis of interatomic Contacts of Structural Units in PDB entry:
3VM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VM5 entry

There is 1 chain in PDB entry 3VM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1HIS 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
57 63Right-handed 310
Helix 3
3
A
75 89Right-handed alpha
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
137 141Right-handed 310
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
172 190Right-handed alpha
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
203 212Right-handed alpha
Helix 10
10
A
243 247Right-handed 310
Helix 11
11
A
255 268Right-handed alpha
Helix 12
12
A
269 272Right-handed 310
Helix 13
13
A
273 280Right-handed 310
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
288 290Right-handed 310
Helix 16
16
A
300 304Right-handed 310
Helix 17
17
A
308 312Right-handed 310
Helix 18
18
A
317 331Right-handed alpha
Helix 19
19
A
385 388Right-handed 310
Helix 20
20
A
389 403Right-handed alpha
Helix 21
21
A
494 496Right-handed 310
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There are 7 sheets in PDB entry 3VM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
39 42parallel
Strand 3
A
92 97parallel
Strand 4
A
193 196parallel
Strand 5
A
229 232parallel
Strand 6
A
252 254parallel
Strand 7
A
292 294parallel
Strand 8
A
335 339parallel
Strand 9
A
12 15parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
119 120anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 412first strand
Strand 2
A
417 422anti-parallel
Strand 3
A
426 431anti-parallel
Strand 4
A
488 492anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 442first strand
Strand 2
A
475 480anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 451first strand
Strand 2
A
467 470anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
462 463anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il