Analysis of interatomic Contacts of Structural Units in PDB entry:
3VM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VM6 entry

There are 3 chains in PDB entry 3VM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 322
B
 ALA 2ASP 322
C
 ALA 2ASP 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3VM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
22 39Right-handed alpha
Helix 3
3
A
45 61Right-handed alpha
Helix 4
4
A
67 86Right-handed alpha
Helix 5
5
A
90 122Right-handed alpha
Helix 6
6
A
136 148Right-handed alpha
Helix 7
7
A
164 175Right-handed alpha
Helix 8
8
A
184 189Right-handed 310
Helix 9
9
A
190 193Right-handed 310
Helix 10
10
A
216 226Right-handed alpha
Helix 11
11
A
236 238Right-handed 310
Helix 12
12
A
256 259Right-handed 310
Helix 13
13
A
262 267Right-handed alpha
Helix 14
14
A
284 286Right-handed 310
Helix 15
15
A
302 309Right-handed alpha
Helix 16
1
B
5 16Right-handed alpha
Helix 17
2
B
22 39Right-handed alpha
Helix 18
3
B
45 61Right-handed alpha
Helix 19
4
B
67 86Right-handed alpha
Helix 20
5
B
90 122Right-handed alpha
Helix 21
6
B
136 148Right-handed alpha
Helix 22
7
B
164 175Right-handed alpha
Helix 23
8
B
184 189Right-handed 310
Helix 24
9
B
190 193Right-handed 310
Helix 25
10
B
216 226Right-handed alpha
Helix 26
11
B
236 238Right-handed 310
Helix 27
12
B
256 259Right-handed 310
Helix 28
13
B
262 267Right-handed alpha
Helix 29
14
B
284 286Right-handed 310
Helix 30
15
B
302 309Right-handed alpha
Helix 31
1
C
5 16Right-handed alpha
Helix 32
2
C
22 39Right-handed alpha
Helix 33
3
C
45 61Right-handed alpha
Helix 34
4
C
67 86Right-handed alpha
Helix 35
5
C
90 122Right-handed alpha
Helix 36
6
C
136 148Right-handed alpha
Helix 37
7
C
164 175Right-handed alpha
Helix 38
8
C
184 189Right-handed 310
Helix 39
9
C
190 193Right-handed 310
Helix 40
10
C
216 226Right-handed alpha
Helix 41
11
C
236 238Right-handed 310
Helix 42
12
C
256 259Right-handed 310
Helix 43
13
C
262 267Right-handed alpha
Helix 44
14
C
284 286Right-handed 310
Helix 45
15
C
302 309Right-handed alpha
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There are 6 sheets in PDB entry 3VM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
153 157parallel
Strand 3
A
128 131parallel
Strand 4
A
196 199parallel
Strand 5
A
230 234parallel
Strand 6
A
289 291parallel
Strand 7
A
295 297anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
279 282anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
153 157parallel
Strand 3
B
128 131parallel
Strand 4
B
196 199parallel
Strand 5
B
230 234parallel
Strand 6
B
289 291parallel
Strand 7
B
295 297anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
209 213anti-parallel
Strand 3
B
279 282anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 182first strand
Strand 2
C
153 157parallel
Strand 3
C
128 131parallel
Strand 4
C
196 199parallel
Strand 5
C
230 234parallel
Strand 6
C
289 291parallel
Strand 7
C
295 297anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 205first strand
Strand 2
C
209 213anti-parallel
Strand 3
C
279 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il