Analysis of interatomic Contacts of Structural Units in PDB entry:
3VM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VM7 entry

There is 1 chain in PDB entry 3VM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLU 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3VM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
52 56Right-handed 310
Helix 4
4
A
62 69Right-handed alpha
Helix 5
5
A
69 76Right-handed alpha
Helix 6
6
A
116 130Right-handed alpha
Helix 7
7
A
148 152Right-handed 310
Helix 8
8
A
153 157Right-handed 310
Helix 9
9
A
162 166Right-handed 310
Helix 10
10
A
176 183Right-handed alpha
Helix 11
11
A
199 218Right-handed alpha
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
231 243Right-handed alpha
Helix 14
14
A
254 259Right-handed alpha
Helix 15
15
A
260 264Right-handed 310
Helix 16
16
A
270 282Right-handed alpha
Helix 17
17
A
288 302Right-handed alpha
Helix 18
18
A
304 307Right-handed 310
Helix 19
19
A
319 324Right-handed alpha
Helix 20
20
A
326 340Right-handed alpha
Helix 21
21
A
349 353Right-handed 310
Helix 22
22
A
365 370Right-handed 310
Helix 23
23
A
375 395Right-handed alpha
Helix 24
24
A
461 465Right-handed 310
Helix 25
25
A
482 485Right-handed 310
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There are 4 sheets in PDB entry 3VM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
245 248parallel
Strand 3
A
221 224parallel
Strand 4
A
133 138parallel
Strand 5
A
80 83parallel
Strand 6
A
32 34parallel
Strand 7
A
343 347parallel
Strand 8
A
309 311parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
104 110anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
412 417anti-parallel
Strand 3
A
420 425anti-parallel
Strand 4
A
476 480anti-parallel
Strand 5
A
448 451anti-parallel
Strand 6
A
456 459anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
466 471anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il